DY256719

Overview
NameDY256719
Unique NameDY256719
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1108
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256719_ssr31 microsatellite DY256719_ssr31:31..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC2_DANRE (Cation transport regulator-like protein 2 OS=Danio rerio GN=chac2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.692e-29
Identity = 74/179 (41.34%), Postives = 101/179 (56.42%), Query Frame = 3
Query:  201 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRK 731
            WVFGYGSL+W   F Y++K +GF+K + R F     DHRG P  P R  TL +  E   WGVAY +  G E+E    EYL+ RE        V F+ + E  QP +   +++  + D   N  YLGPAPLE +A+QI  +VGP G N DYLF+L  A+  +  E  DD++  L   V++
Sbjct:    2 WVFGYGSLIWKVDFPYEDKRVGFVKGFSRRFWQGSTDHRGVPGKPGRVVTLIEDPEGCVWGVAYKLPSGQEQE--VKEYLDYREKGGYGVITVTFHPKDEQQQP-MQDTLLYIGSCD---NPNYLGPAPLETIAQQIVKSVGPSGKNTDYLFELADALRQLVPEDLDDHLFSLERLVKQ 174          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC2_XENLA (Cation transport regulator-like protein 2 OS=Xenopus laevis GN=chac2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.188e-27
Identity = 75/179 (41.90%), Postives = 100/179 (55.87%), Query Frame = 3
Query:  201 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRK 731
            WVFGYGSL+W   F Y EK++G+I  Y R F     DHRG P  P R  TL +  E   WGVAY +  G E+E  A  YL+ RE      + V FY +    QP    V+++  T D   N  YLGPAPLE++A QI   VGP G N +YLF+L  ++ ++  E  D+++  L   VR+
Sbjct:    2 WVFGYGSLIWKVDFPYVEKLVGYIMCYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPEGKEEEVKA--YLDFREKGGYRTSTVVFYPKDPSIQP--FNVLLYIGTCD---NPNYLGPAPLEDIAEQILNAVGPSGRNTEYLFELANSLRNLVPEDADEHLFSLEKLVRQ 173          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC2_CHICK (Cation transport regulator-like protein 2 OS=Gallus gallus GN=chac2 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.551e-27
Identity = 73/165 (44.24%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  201 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAMFDIGHED 695
            WVFGYGSL+W   F Y EK++G I+ Y R F     DHRG P  P R  TL +  E   WGVAY +  G E E  A  YL+ RE      T V FY +    +P    V+++  T D   N  YLGPAPL+E+A QI   VGP G N +YLF+L  +M ++  ED
Sbjct:    2 WVFGYGSLIWKVDFPYQEKMVGRIRGYSRRFWQGSTDHRGVPGKPGRVVTLVEDPEGCVWGVAYRLPAGQECEVKA--YLDFREKGGYRTTTVVFYPKDSSIKP--FDVLLYIGTRD---NPNYLGPAPLQEIAEQIIDAVGPSGRNTEYLFELANSMRNLVPED 159          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC2_HUMAN (Cation transport regulator-like protein 2 OS=Homo sapiens GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 7.698e-27
Identity = 72/181 (39.78%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  201 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 737
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI    GP G N +YLF+L  ++ ++  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDPTTKP--FSVLLYIGTCD---NPDYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVKERL 175          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC2_RAT (Cation transport regulator-like protein 2 OS=Rattus norvegicus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.715e-26
Identity = 71/181 (39.23%), Postives = 99/181 (54.70%), Query Frame = 3
Query:  201 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 737
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI    GP G N +YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSIRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC2_MOUSE (Cation transport regulator-like protein 2 OS=Mus musculus GN=Chac2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.715e-26
Identity = 71/181 (39.23%), Postives = 99/181 (54.70%), Query Frame = 3
Query:  201 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 737
            WVFGYGSL+W   F Y +K++G+I +Y R F     DHRG P  P R  TL +      WGVAY +  G E+E     YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI    GP G N +YLF+L  ++  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPGGSVWGVAYKLPVGKEEE--VKTYLDFREKGGYRTTTVIFYPKDSTTKP--FSVLLYIGTCD---NPNYLGPAPLEDIAEQIFNAAGPSGRNTEYLFELADSVRKLVPEDADEHLFSLEKLVKERL 175          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC1_MOUSE (Cation transport regulator-like protein 1 OS=Mus musculus GN=Chac1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.576e-24
Identity = 70/172 (40.70%), Postives = 91/172 (52.91%), Query Frame = 3
Query:  168 PFFL*FGKMVFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAM 674
            PF+        W+FGYGSLVW P F Y +  +GF++ Y R F      HRG+ + P R  TL +  E   WGVAY VRG  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M
Sbjct:   24 PFWGDGDPQALWIFGYGSLVWKPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVRG--EQVNEALKYLNVREAVLGGYDTKE-VTFYPQDTPDQPLT--ALAYVATP---QNPGYLGPAPEEVIATQILACRGFSGHNLEYLLRLADFM 187          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC1_HUMAN (Cation transport regulator-like protein 1 OS=Homo sapiens GN=CHAC1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.040e-23
Identity = 70/180 (38.89%), Postives = 97/180 (53.89%), Query Frame = 3
Query:  201 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAMFDIG--HEDDYIIELANEV 725
            W+FGYGSLVW P F Y +  +GF++ Y R F      HRG+ + P R  TL +  E   WGVAY V+G  E+   A++YL  RE     YD+K  V FY +  P QP     + + +TP    N  YLGPAP E +A QI    G  G+N +YL +L   M   G   +D+++  + + V
Sbjct:   34 WIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCTWGVAYQVQG--EQVSKALKYLNVREAVLGGYDTKE-VTFYPQDAPDQP--LKALAYVATP---QNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAIVDAV 205          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC1_DANRE (Cation transport regulator-like protein 1 OS=Danio rerio GN=chac1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.040e-23
Identity = 66/165 (40.00%), Postives = 88/165 (53.33%), Query Frame = 3
Query:  186 GKMVFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDS--KTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAM 674
            GK   W+FGYGSLVW P F+Y    +G+IK Y+R F      HRG  + P R  TL +  +   WGVA+ V G   +E  +++YL  RE          VDF+  G    P     +V+ +TPD   N  YLGPA  EE+A QIA   G  G+N +YL +L + M
Sbjct:    9 GKSSLWIFGYGSLVWKPDFKYKRSKVGYIKGYKRRFWHGDNFHRGDDEMPGRVVTLIEEDDVCTWGVAFEVTGSQMEE--SLKYLNVREAVRGGYLTRAVDFFPRGTNQPP--VQALVYIATPD---NPIYLGPASTEEIASQIAVCKGNSGHNIEYLLRLAEFM 166          
BLAST of DY256719 vs. ExPASy Swiss-Prot
Match: CHAC2_BOVIN (Cation transport regulator-like protein 2 OS=Bos taurus GN=CHAC2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.027e-23
Identity = 69/181 (38.12%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  201 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATTVGPCGNNRDYLFKLEKAMFDIGHE--DDYIIELANEVRKEL 737
            WVFGYGSL+W   F Y +K++G+I  Y R F     DHRG P   +             WGVAY +  G E+E  A  YL+ RE      T V FY +   ++P    V+++  T D   N  YLGPAPLE++A QI    GP G N +YLF+L  +M  +  E  D+++  L   V++ L
Sbjct:    2 WVFGYGSLIWKVDFPYQDKLVGYISGYSRRFWQGSTDHRGVPGKGS------------VWGVAYKLPVGKEEEVKA--YLDFREKGGYRTTTVIFYPKDSTTEP--FSVLLYIGTRD---NPNYLGPAPLEDIAEQIFNAAGPSGKNTEYLFELANSMRSLVPEDADEHLFSLEKLVKERL 163          
The following BLAST results are available for this feature:
BLAST of DY256719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CHAC2_DANRE3.692e-2941.34Cation transport regulator-like protein 2 OS=Danio... [more]
CHAC2_XENLA1.188e-2741.90Cation transport regulator-like protein 2 OS=Xenop... [more]
CHAC2_CHICK1.551e-2744.24Cation transport regulator-like protein 2 OS=Gallu... [more]
CHAC2_HUMAN7.698e-2739.78Cation transport regulator-like protein 2 OS=Homo ... [more]
CHAC2_RAT1.715e-2639.23Cation transport regulator-like protein 2 OS=Rattu... [more]
CHAC2_MOUSE1.715e-2639.23Cation transport regulator-like protein 2 OS=Mus m... [more]
CHAC1_MOUSE3.576e-2440.70Cation transport regulator-like protein 1 OS=Mus m... [more]
CHAC1_HUMAN1.040e-2338.89Cation transport regulator-like protein 1 OS=Homo ... [more]
CHAC1_DANRE1.040e-2340.00Cation transport regulator-like protein 1 OS=Danio... [more]
CHAC2_BOVIN3.027e-2338.12Cation transport regulator-like protein 2 OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA1CH11ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256719 ID=DY256719; Name=DY256719; organism=Citrus clementina; type=EST; length=1108bp
GGTCTCAATTGCACCCACACGAGAGACGGGGAGAGAGAGAGAGAGAGAGG
AAGCGAAGAGAAATAGAAAGAGAGAATACAGAATCCTAACCTTAGGCGTT
TTAGCTTGTTTCGTTTCCCTCTTTTGCTTCAAGTTTCTTCCTTTCTCCCG
CGATTTCCTTGTATGCTCCTTTCTTTCTCTGATTTGGGAAAATGGTGTTC
TGGGTTTTTGGGTATGGATCATTGGTGTGGAACCCAGGGTTTGAATATGA
TGAGAAAATTTTAGGCTTCATCAAGGACTACAGGCGCGTGTTTGATCTTG
CATGCATTGATCACAGGGGTACACCTCAACACCCGGCTAGAACTTGCACG
CTGGAAAAATCTCAAGAAACCATTTGTTGGGGTGTTGCTTATTGTGTCCG
AGGAGGTCCTGAAAAGGAAAGACTCGCTATGGAGTATTTGGAACGAAGAG
AATGCGAGTACGACTCTAAGACCCTTGTAGACTTTTACAGGGAAGGGGAG
CCTTCACAGCCGGCTCTAACTGGGGTTATAGTTTTCACGTCTACTCCAGA
CAAAGTATCAAACAAGTATTATCTGGGGCCTGCTCCATTGGAGGAAATGG
CTAGGCAAATTGCAACGACTGTCGGACCCTGTGGAAACAATAGAGACTAC
CTTTTCAAGTTGGAGAAGGCCATGTTTGATATTGGTCATGAGGACGACTA
CATAATAGAGCTGGCAAATGAAGTGAGGAAAGAGCTTGGAACTGCTGAAA
AAGGAATTCTCAAGGAGAGGAAGTTGGTTGGGTCACCATCCCGCATGCCG
CTCACAAAATCTCATATTCCAACCCTTCAACTGGGTCTACGCCCTGAGGC
GGTGGCCATGGATTCATAAGAACACAAGGCTGACAGACACCATAGGCCTA
GGGGACTAATCAAAGATATCAAGCAACGTAGCTAAAACCAATCGCCATCA
TCTTTGTTTTTCTTCTTTTTTTTTTTCAACCTTTTTTCCTCCCTTTTTAG
GATGAAAAACGGAGTGGGTTTGGAAATTGAAAAGTTGACGGGCTAACCAT
ACCCAAATAACATGTTTGTGGTAACCCAGGTTGAAGGTTAATTTTCCATT
TTTCCGGG
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