DY256815

Overview
NameDY256815
Unique NameDY256815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10960 contig Ccv1_Contig10960:174..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.047e-55
Identity = 104/172 (60.47%), Postives = 134/172 (77.91%), Query Frame = 2
Query:  116 AAGIADTRFIKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLINKFAGKH 631
            A+     +FIK+SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+S+S  E+ ++  AKG DF + MSNVETWVSAALTDE TC DGF GK ++GK+K SVRAQVV VA VTSNAL+L+N FA KH
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.581e-17
Identity = 51/158 (32.28%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  143 IKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 610
            +KSSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF        V+ ++    V+V  + SNAL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLS--QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.581e-17
Identity = 51/158 (32.28%), Postives = 88/158 (55.70%), Query Frame = 2
Query:  143 IKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 610
            +KSSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF        V+ ++    V+V  + SNAL++I
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLS--QHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMI 224          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.210e-16
Identity = 50/168 (29.76%), Postives = 90/168 (53.57%), Query Frame = 2
Query:  110 VTAAGIADTRFIKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 610
            +T         +KS C ST YP LC  +++A       S +++   +L+++    +     V KL  K + L  RE  A+ DCL+ + +T+D L  +V++L+   + K      H  +++T +S+A+T++ TC DGF     + KV+ ++    V+V H+ SNAL++I
Sbjct:   51 ITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKS--LRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMI 216          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.082e-15
Identity = 46/157 (29.30%), Postives = 92/157 (58.60%), Query Frame = 2
Query:  143 IKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 610
            ++SSC ST YP LC+ ++         S + +   +++++++  +     V KL +K + L  RE  A+ DCL+ + +T+D L ++V++L H+   K +    H  +++T +S+A+T++ TC DGF     + +V+ ++    ++V H+ SNAL++I
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDL-HLYPTK-KTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMI 213          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.408e-14
Identity = 53/164 (32.32%), Postives = 80/164 (48.78%), Query Frame = 2
Query:  143 IKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFG---GKALEGKVKSSVRAQVVNVAHVTSNALSLINKFAG 625
            +K+ C +T YP+ C  S+S+   S    P  L   +L V++    S   F +KLR       R  +AI  C    GD +DRL+ S+  L  +           +SNVETW+SAALTD++TC D  G     A  G ++  +   + N     SN+L+++ K  G
Sbjct:   77 LKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSS---FPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSA--SVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQ-EIETAMRNSTEFASNSLAIVTKILG 234          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.442e-12
Identity = 47/159 (29.56%), Postives = 87/159 (54.72%), Query Frame = 2
Query:  143 IKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRN-LKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLI 610
            +KS+C +T +P LC  ++   +   ++   Q  V  LS++++     +++  V +L K R  L  RE  A+ DCL+ M +T+D L  +V++L      K      H+ +++T +S+A+T++ TC DGF     + KV+  +     +V  + SNAL++I
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKS--LKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMI 222          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.166e-12
Identity = 50/158 (31.65%), Postives = 83/158 (52.53%), Query Frame = 2
Query:  143 IKSSCKSTTYPALCVQSLSAYAPSIQ-QSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGKALEGKVKSSVRAQVVNVAHVTSNALSLIN 613
            I  +C+ T +P LCV SL  +  S+   S + L    ++++L     A      L  F ++  R   A   C++ + D+VD LS+++  +     AK QD       V TW+SAALT+ +TCT+GF G   +G VK  + A + N++ + SN L++ +
Sbjct:   87 ISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASL-SFVDMPPRARSAYDSCVELLDDSVDALSRALSSVVS-SSAKPQD-------VTTWLSAALTNHDTCTEGFDG-VDDGGVKDHMTAALQNLSELVSNCLAIFS 234          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.583e-11
Identity = 45/166 (27.11%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  134 TRFIKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGG-KALEGKVKSSVRAQVVNVAHVTSNALSLINKFAGK 628
            T+ I  +C  + YP LC+ +L  +  S+     +L   + + +L +   A  + +    +  +  R   A   CL+ + D+VD L++++  +  +   +        S+V TW+S+A+T+ +TCTDGF   +   G+VK  V   V +++ + SN L++   FAGK
Sbjct:   72 TQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKAL-YTSSTITYTQMPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDESH------SDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAI---FAGK 227          
BLAST of DY256815 vs. ExPASy Swiss-Prot
Match: PME26_ARATH (Putative pectinesterase/pectinesterase inhibitor 26 OS=Arabidopsis thaliana GN=PME26 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 43/165 (26.06%), Postives = 77/165 (46.67%), Query Frame = 2
Query:  143 IKSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFG------GKALEGKVKSSVRAQVVNVAHVTSNALSLINKF 619
            +++ C  T YPA CV S+S    S    P  L   +L V ++   S      KL +  +   R   +++ C D   D +D ++ ++  +  +G  K       +  ++TW+SAA+TD +TC D          +     +   +++ +VN    TSN+L++I KF
Sbjct:  271 LRNVCSVTRYPASCVSSISKLPSSNTTDPEALFRLSLQVVINELNSIAGLPKKLAEETD-DERLKSSLSVCGDVFNDAIDIVNDTISTMEEVGDGKKILKSSTIDEIQTWLSAAVTDHDTCLDALDELSQNKTEYANSPISLKLKSAMVNSRKFTSNSLAIIAKF 434          
The following BLAST results are available for this feature:
BLAST of DY256815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
21KD_DAUCA3.047e-5560.4721 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI9.581e-1732.28Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI9.581e-1732.28Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME2_ARATH6.210e-1629.76Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH3.082e-1529.30Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_PHAVU3.408e-1432.32Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PMEU1_SOLLC2.442e-1229.56Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME34_ARATH4.166e-1231.65Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME61_ARATH1.583e-1127.11Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME26_ARATH7.856e-1126.06Putative pectinesterase/pectinesterase inhibitor 2... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2BD10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256815 ID=DY256815; Name=DY256815; organism=Citrus clementina; type=EST; length=787bp
GTCTCAGAATCCCACCAAGCTAGCAGAAAGCTTTTAATTAGTTTCTGAAA
ACATGGCAAAAACAGGCTGTCTTTTGCTATTGCTCTCTCTCCTCTACATT
ATAAGCTTGGTCACAGCTGCCGGGATTGCTGACACAAGATTTATCAAAAG
TTCTTGCAAATCCACAACTTATCCAGCGCTGTGCGTGCAGTCTCTCTCAG
CTTATGCCCCATCAATTCAACAAAGCCCCCGGCAACTGGCTGTCACAGCC
TTGTCCGTGAGCCTCTCCAGGGCCCAATCCGCAAAGTCATTCGTGACCAA
GCTGAGGAAGTTCAGGAACCTGAAGCACAGAGAGTATGAGGCGATTGCCG
ACTGCTTGGATGAGATGGGTGACACTGTGGACCGGCTCAGCAAGTCGGTT
CAGGAGCTGAACCACATGGGTCAGGCCAAGGGTCAGGACTTTCTGTGGCA
CATGAGCAACGTTGAGACATGGGTTAGTGCTGCTTTGACTGATGAGAACA
CTTGTACTGATGGGTTCGGTGGCAAGGCCTTGGAGGGTAAGGTTAAGTCC
TCTGTTAGGGCTCAGGTTGTTAATGTTGCTCATGTCACTAGCAATGCCCT
TTCACTGATCAATAAGTTTGCTGGGAAACACTGAGCCGTAGTTAACCATA
TGGCTGTGTGAATGTTTTGCGAGAGTTTGTGTCTCTTTTTATCTTTGGTT
TAGTTTTAATGTACAAATTAATCATCAGTTATAAATGAGTGTTAATTTTG
AGCATATCTATAAAAATGAGCTTATGTGAATGAGCNN
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