DY256860

Overview
NameDY256860
Unique NameDY256860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1124
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9698 contig Ccv1_Contig9698:10..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY256860 vs. ExPASy Swiss-Prot
Match: EXEC1_ARATH (Protein EXECUTER 1, chloroplastic OS=Arabidopsis thaliana GN=EX1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 5.196e-55
Identity = 112/202 (55.45%), Postives = 146/202 (72.28%), Query Frame = 1 
Query:   85 DVAKAFWSSDKASSKVSRDVREVLKLAVSQAQKQSKLSEYTTFSRINTSEGDLDPFDGLYVGAFGPYGTEVVQLRRKYGQWSG--EGEKSSDMEFFEYVEAVKLTGDLNVPAGEVTFRAKIGKGSRLPNRGKFPDELGVVASYSGQGRIADFGFRNPKWVDGELLQLNGKGMGPYVKGAD-LGFLYVVPEQSFLVLFNRLKL 681
            D+AK+     K S K+ +DV E+L L +SQAQ + +LS  T F RI+ +   LDP DGLY+GA G Y +EV+ L+RK+GQW G  E +K +D+EF+EYVEAVKLTGD  VPAG+V FRAKIG+   LP++G  P+E GV+A Y GQGR+AD GFRNP+WVDGEL+ L+GK    YVKG   +GF+Y  PE  F++ FNRL+L
Sbjct:  486 DLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPS-LDPLDGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAGKVAFRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGK----YVKGGPVVGFVYWAPEYHFVMFFNRLRL 682
The following BLAST results are available for this feature:
BLAST of DY256860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EXEC1_ARATH5.196e-5555.45Protein EXECUTER 1, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2CE03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256860 ID=DY256860; Name=DY256860; organism=Citrus clementina; type=EST; length=1124bp
ATGATCACACTGTGAGAAATTTAAATGTCTAAGCTGAAAGTAGCTGCCTT
AGCAGCTCATGTTGTTTCAGAGCTTATGCCTTTTGATGTTGCAAAGGCAT
TTTGGAGTTCTGACAAAGCCTCTTCAAAGGTTTCTAGAGATGTGCGTGAA
GTCTTGAAACTTGCAGTCAGTCAGGCGCAAAAGCAGAGCAAACTATCTGA
GTATACAACCTTTAGTCGAATCAACACTTCCGAAGGAGATTTAGATCCAT
TTGATGGACTGTATGTTGGAGCGTTCGGCCCTTACGGCACTGAAGTTGTA
CAATTGAGGCGAAAATACGGTCAATGGAGTGGTGAGGGTGAGAAGTCTTC
AGATATGGAGTTTTTTGAATACGTGGAGGCTGTAAAACTAACTGGGGACC
TTAATGTTCCTGCTGGTGAGGTGACATTTCGGGCTAAAATTGGGAAAGGG
AGTCGCCTCCCTAACCGTGGGAAGTTTCCAGATGAGTTGGGTGTGGTTGC
TAGTTACAGTGGTCAAGGAAGAATAGCAGACTTTGGGTTCAGAAATCCTA
AATGGGTTGATGGTGAACTTCTTCAACTCAACGGCAAGGGGATGGGACCA
TACGTCAAAGGCGCAGATCTTGGTTTCCTTTACGTTGTCCCTGAGCAAAG
TTTCCTTGTGTTGTTTAACCGTTTAAAGCTGCCAGACTAAGCCATCTGGT
TAATATTTGGTTAACTCAAAATCACCTATGATACAGCTAATATTAAATGC
GATGCGAGTACTTTCGTATACAGCAGCTGAAAATGAGAGTTTGGTTCTCT
GTCTTTTGGTTTTATCGTATCTCCTTGGTTCCCCACTTTTTTCCAAGGTT
TTGTATAACATTTTTTGTTACTTGAACCAAAATATGTAAACAGCCTAATA
ATTTAATACCCCGAATGGGCCTTTTTCCCAAGTAATTTATTCTTTGTCTT
TTGGAGGGTCCCCTTAGGGAATTTGGCCAAAACATCTTTTCCCGGGGGGT
TCTTGGGGATTATTAAACAAAAACTTTTTGGGGGATACAAATAATTTTAT
AAATTTATTATCCAAAAGGAAGCCCCCGGGCGTTTTGCCCTTTTTCCCAA
TTGGTTTGGAAAACACTTCGTGGA
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