DY256863

Overview
NameDY256863
Unique NameDY256863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256863_ssr761 microsatellite DY256863_ssr761:761..772. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY256863 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.387e-19
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1 
Query:    4 EEIFKEFLI-SQPSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNIYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 360
            EEI + F    Q S  + +  GN  A ++    N N +  R    + +++C+F G+L+N   L K YGLS+ + EAM ++EAY+ LRDR PYP  QV+++L+G F F+L+D KA T+F A
Sbjct:   32 EEIAESFKTWKQDSTFYHLFNGNFMAFSH---GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of DY256863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.387e-1940.83Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2CE07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256863 ID=DY256863; Name=DY256863; organism=Citrus clementina; type=EST; length=1029bp
CCTGAGGAGATTTTCAAGGAATTTTTAATTTCGCAGCCTTCTAATGCTTT
TTCAATCAACTTCGGAAATGCAGCTGCTCTCGCTTATGTGCCACCAGAAA
ATCCCAACTCCGTCTCCCAAAGGTGGTTTTGTGGCTTACATAACATATAC
TGCATGTTCATGGGGAGCTTAAACAACTTGAGCAGCCTCAACAAACAATA
TGGGCTGTCAAAAGGCTCCAATGAGGCCATGTTTGTTATTGAAGCATACC
GGACCCTCCGTGATCGCGGCCCATACCCGGCTCATCAGGTCCTGCGAGAT
CTTGATGGCAGCTTTGGTTTTGTGCTCTATGATTGCAAGGCTGGAACTAT
ATTTGCGGCACTGGATGCTGATGAAGGAGTGCGACTCTTCTGGGGCATTG
CAGCTGATGGGTCCGTGGTCATTTCTGACAATTTGGAGCTTATAAAAGCA
AGTTGTGCCAAATCATTTGCACCGTTTCCAGCCGGGTGCATGTTTCACAG
CGAGCAAGGGCTGATGAGCTTTGAGCATCCAACGAGGGAGATGAAGGCAA
TGCCTAGAATTGACAGTGAAGGAGTAATGTGTGGGGCTAACTTCAAAGTC
GATGCTCAGTCCAGGATGAGAAGCATGCCACGTGTTGGCAGCGAAGCGAA
TTGGGCATTGTCCGGCTCCCATGCTTGGGCCTAACCCTAGGCGCAAGCGC
AGATCAATAAGAAGATTGAAAAAATTCCACTCACATTCTCTGTCCAGTTC
CATTTTCTGTTTAATTAATTAAATTTTTTTTTTTTTTTGGGTTTATTTTA
ACTTTTTGGCCTTTTTTTACCACACCATTAAATCCGTCGTTCTTTCCTTT
TATTTTTTTTCCCCCCACCTTATTCCAGTAATTGAATTGAAAAAACGTTC
TCACCCCCTAATGCTAAATTTTTATCCCAACCCGGCTGCCTGCTTTTCCA
AAACAACCAAACCCCAAAAAAATATAATTTTTTTTTATTTTTAAAAAAGT
AAATTTTTTCATTCTTTCTTTTTTGTTTT
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