DY256873

Overview
NameDY256873
Unique NameDY256873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig834 contig Ccv1_Contig834:59..483. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 8.084e-37
Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 2
Query:    2 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKKGD 256
            VLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ++LCQPTGG+AKLTEGCSF++KGD
Sbjct:    2 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.794e-35
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    2 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKKGD 256
            VLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ+VLCQPTGG+A+LTEGCSF++KGD
Sbjct:    2 VLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.686e-34
Identity = 67/83 (80.72%), Postives = 72/83 (86.75%), Query Frame = 2
Query:    2 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            VLQNDIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ++LC PTGG+AKLTEGCSF+KK
Sbjct:    2 VLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.093e-33
Identity = 66/83 (79.52%), Postives = 71/83 (85.54%), Query Frame = 2
Query:    2 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            VLQNDIDLL+PP           RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGG+A+L EGCSF+KK
Sbjct:    2 VLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.629e-31
Identity = 62/85 (72.94%), Postives = 68/85 (80.00%), Query Frame = 2
Query:    2 VLQNDIDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKKGD 256
            VL +DIDLLNPPA          RLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C SVLC PTG   +LTEGCSF++K D
Sbjct:    2 VLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.764e-26
Identity = 52/78 (66.67%), Postives = 61/78 (78.21%), Query Frame = 2
Query:   17 IDLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            +DLLNP            +LVQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C SVLCQPTGG+A+L EGCSF++K
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DY256873 vs. ExPASy Swiss-Prot
Match: RS27_HUMAN (40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   20 DLLNPPAXXXXXXXXXXRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRAKLTEGCSFKKK 250
            DLL+P            RLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+A+LTEGCSF++K
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of DY256873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS272_ARATH8.084e-3782.3540S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU5.794e-3580.0040S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS271_ARATH1.686e-3480.7240S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS273_ARATH1.093e-3379.5240S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_CHLRE6.629e-3172.9440S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_SCHPO3.764e-2666.6740S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS27_XENLA1.211e-2464.9440S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT1.211e-2464.9440S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_MOUSE1.211e-2464.9440S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]
RS27_HUMAN1.211e-2464.9440S ribosomal protein S27 OS=Homo sapiens GN=RPS27... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAA2CG03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256873 ID=DY256873; Name=DY256873; organism=Citrus clementina; type=EST; length=425bp
GGTTCTCCAAAATGATATTGATTTGTTGAATCCTCCTGCTGAGCTTGAGA
AGAAGAAGCACAAGCTTAAGCGGCTTGTTCAATCCCCCAATTCCTTTTTC
ATGGATGTGAAATGTCAGGGTTGTTTCAACATAACAACTGTTTTCAGCCA
CTCTCAAACTGTTGTGGTTTGTGGCAACTGCCAATCCGTTCTGTGCCAGC
CCACTGGTGGTCGTGCCAAACTCACTGAGGGATGCTCGTTCAAAAAAAAA
GGTGACTAAGTGTTGCCTAAATGATAAATCTTTTCATTTTGGTTATGATG
TATTGAGTTTGGTAGAAGGTTTAAGGTCAGACAGTGTTTTAACCTTTTGT
TTCAAATTTAATTTACTCGATGTAGTGGATGATCTTATGTTTGAAAGAAA
ATATTTTTAAGTGAATGTTTTTCAA
back to top