DY256888

Overview
NameDY256888
Unique NameDY256888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1008 contig Ccv1_Contig1008:1..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DJB13_HUMAN (DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.498e-23
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFPTSLTAEQKAGINF*VLT 357
            G+   N+ PAD++FIV EK H  F R+ ++L     I LG+AL   TV + TLD R+LNIPI+++IHP Y   VP EGMP+  +P+K+G L I F+I+FPT LT ++K  +   +LT
Sbjct:  200 GDQGPNIIPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDRLLNIPINDIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQALLT 316          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DJB13_MOUSE (DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.360e-23
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFPTSLTAEQKAGINF*VLT 357
            G+   N+ PAD++FIV EK H  F R+ ++L     I LG+AL   TV + TLD R+LNIPI++++HP Y   VP EGMP+   PSK+G L I F+I+FPT LT ++K  +   +LT
Sbjct:  200 GDQGPNIIPADIIFIVKEKLHPRFRREHDNLFFVYPIPLGKALTCCTVEVKTLDDRLLNIPINDIVHPKYFKIVPGEGMPLPENPSKKGDLFIFFDIQFPTRLTPQKKQMLRQALLT 316          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJB1_MOUSE (DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.892e-20
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFPTSLTAEQK 330
            G+   N  PAD+VF++ +KPH++F RDG+D+I    I+L EAL G TV + TLDGR + +   +VI P     VP EG+P+   P KRG L I+F + FP  +    +
Sbjct:  224 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLVIEFEVIFPERIPVSSR 331          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJB1_HUMAN (DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFP 306
            G+   N  PAD+VF++ +KPH++F RDG+D+I    I+L EAL G TV + TLDGR + +   +VI P     VP EG+P+   P KRG L I+F + FP
Sbjct:  224 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFP 323          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFP 306
            G+   N  PAD+VF++ +KPH++F RDG+D+I    I+L EAL G TV + TLDGR + +   +VI P     VP EG+P+   P KRG L I+F + FP
Sbjct:  224 GDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFP 323          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   37 DVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFPTSLTAEQK 330
            D+ F++ EKPH VFTR G+DL +   ++L EAL G++ +++T+DG+ L +       P YE+T P  GMP+   PS+RG + I+  +KFPT LT  QK
Sbjct:  276 DIQFVLAEKPHPVFTRSGDDLRMQVELSLKEALLGFSKQISTIDGKKLKVSSSLPTQPGYEITYPGFGMPLPKNPSQRGNMIIECKVKFPTELTPAQK 373          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJB5_MOUSE (DnaJ homolog subfamily B member 5 OS=Mus musculus GN=Dnajb5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   31 PADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFPTSLTAEQK 330
            PAD+VF++ +KPH+ F RDG +++ +  I+L EAL G TV + T+DGR++ +P ++VI P     +  EG+P    P++RG L ++F ++FP  LT + +
Sbjct:  239 PADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTR 338          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   31 PADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFPTSLTAEQK 330
            PAD+VF++ +KPH+ F RDG +++ +  I+L EAL G TV + T+DGR++ +P ++VI P     +  EG+P    P++RG L ++F ++FP  LT + +
Sbjct:  239 PADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTR 338          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJB5_BOVIN (DnaJ homolog subfamily B member 5 OS=Bos taurus GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   31 PADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFPTSLTAEQK 330
            PAD+VF++ +KPH+ F RDG +++ +  I+L EAL G TV + T+DGR++ +P ++VI P     +  EG+P    P++RG L ++F ++FP  LT + +
Sbjct:  239 PADIVFVLKDKPHAHFRRDGTNVLYSALISLKEALCGCTVNIPTIDGRVIPLPCNDVIKPGTVKRLRGEGLPFPKVPTQRGDLIVEFKVRFPDRLTPQTR 338          
BLAST of DY256888 vs. ExPASy Swiss-Prot
Match: DNJB4_PONAB (DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.358e-16
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    7 GNVQQNVKPADVVFIVDEKPHSVFTRDGNDLIVTRTITLGEALKGYTVRLTTLDGRILNIPIDNVIHPNYEMTVPREGMPIQNEPSKRGKLTIKFNIKFPTSLTAEQK 330
            G+   N  PAD+VFI+ +K H  F RDG+++I T  I+L EAL G ++ + TLDGR + + +++++ P     +   G+P    P +RG L I+F + FP ++++  K
Sbjct:  220 GDETPNSIPADIVFIIKDKDHPKFKRDGSNIIYTAKISLREALCGCSINVPTLDGRNIPMSVNDIVKPGMRRRIIGYGLPFPKNPDQRGDLLIEFEVSFPDTISSSSK 327          
The following BLAST results are available for this feature:
BLAST of DY256888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
DJB13_HUMAN1.498e-2347.01DnaJ homolog subfamily B member 13 OS=Homo sapiens... [more]
DJB13_MOUSE4.360e-2347.01DnaJ homolog subfamily B member 13 OS=Mus musculus... [more]
DNJB1_MOUSE5.892e-2042.59DnaJ homolog subfamily B member 1 OS=Mus musculus ... [more]
DNJB1_HUMAN1.005e-1946.00DnaJ homolog subfamily B member 1 OS=Homo sapiens ... [more]
DNJB1_BOVIN1.005e-1946.00DnaJ homolog subfamily B member 1 OS=Bos taurus GN... [more]
PSI1_SCHPO1.895e-1843.88Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]
DNJB5_MOUSE3.233e-1840.00DnaJ homolog subfamily B member 5 OS=Mus musculus ... [more]
DNJB5_HUMAN3.233e-1840.00DnaJ homolog subfamily B member 5 OS=Homo sapiens ... [more]
DNJB5_BOVIN3.233e-1840.00DnaJ homolog subfamily B member 5 OS=Bos taurus GN... [more]
DNJB4_PONAB1.358e-1636.11DnaJ homolog subfamily B member 4 OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DB10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256888 ID=DY256888; Name=DY256888; organism=Citrus clementina; type=EST; length=609bp
GCGGGGGGAAATGTGCAGCAAAATGTTAAACCTGCAGACGTCGTCTTCAT
CGTCGACGAGAAGCCTCACAGTGTGTTTACTCGAGATGGGAATGATTTGA
TCGTCACAAGGACGATAACTCTCGGTGAGGCCTTGAAAGGTTATACGGTT
CGTCTCACCACCCTGGATGGAAGGATTTTGAACATCCCAATCGACAATGT
GATTCATCCCAACTATGAGATGACTGTCCCGAGAGAGGGGATGCCAATTC
AGAACGAGCCATCAAAGAGAGGCAAGTTGACAATCAAGTTCAACATCAAG
TTCCCAACAAGTTTGACTGCAGAGCAGAAGGCCGGGATCAACTTTTAAGT
TTTAACAGCTTTTAAATCGATGGTTACCTTGGTTTGGGTTGTTTCAGAGC
GGCGGTGTCCTAATTAATGTTTTTTTGGAGCTGGCTAAAGTTACAGCATC
TGTAAGTTACAGATGCTGCTTCAGCCCAGCAACCAACCTTGCTTTGCGTT
GCTTTTTCTCTGTAAGTCAGGACACGTGTGCTATTTGCTTTGGGCTTTTT
TTTTTTTCTTCAAAATGTGCGTCAGTTGTGTATAAATAAAGATTTTGACT
TTTGTCCTT
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