DY256911

Overview
NameDY256911
Unique NameDY256911
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1120
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9751 contig Ccv1_Contig9751:4..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA2_ARATH (Regulator of ribonuclease-like protein 2 OS=Arabidopsis thaliana GN=At5g16450 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.275e-53
Identity = 101/123 (82.11%), Postives = 112/123 (91.06%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+KVF+ N LIR+F+EEKGN RVLVVDGGGS RCAILGGNPVVQA NNGWAGIVVNGCIRDVDEINGCDIGVRALAS P+KA+KKG+GE+ VP+ I GTRI DGEWLYADTDGIL+S+ ELSV
Sbjct:   44 TVKVFEDNGLIRQFIEEKGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA1_ARATH (Regulator of ribonuclease-like protein 1 OS=Arabidopsis thaliana GN=At3g02770 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 3.709e-53
Identity = 101/123 (82.11%), Postives = 111/123 (90.24%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            T+KVF+ N LIR FLEEKGN RVLVVDGGGSLRCAILGGNPVVQA NNGWAGI+VNGCIRDVDEINGCDIGVRALAS P+KA+KKG+GE+ V + I GTRI DGEWLYADTDGIL+S+ ELSV
Sbjct:   44 TVKVFEDNGLIRHFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALASHPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA3_ARATH (Regulator of ribonuclease-like protein 3 OS=Arabidopsis thaliana GN=At5g56260 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.855e-45
Identity = 87/123 (70.73%), Postives = 102/123 (82.93%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 369
            TLKVF+ NVL+R  LE KG   VLV+DGGGS+RCA++GGN    A NNGW+GIVVNGC+RDVDEIN CD+GVRAL S P+K+ KKG GEK+VP+ IGGT I DGEWLYAD+DGILIS+ ELSV
Sbjct:   44 TLKVFEDNVLVRNQLETKGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCDVGVRALGSNPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURM1 (Regulator of ribonuclease activity A OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rraA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.849e-36
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 366
            TLKVF+ N L+R  LE+ G  RVLVVDGG SLRCA++GGN    A  NGWAGIVV+GC+RD  E+  C +GV ALA+ P K++K+G GE+ VP+T+ GTRI+ GEW+YAD DG+L+S   L+
Sbjct:   43 TLKVFEDNTLVRAALEQDGGGRVLVVDGGASLRCALVGGNLGALAEKNGWAGIVVHGCVRDAAELRECKVGVLALATHPRKSDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSATSLT 164          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_RALEJ (Regulator of ribonuclease activity A OS=Ralstonia eutropha (strain JMP134) GN=rraA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.015e-34
Identity = 66/121 (54.55%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 363
            TLK+F+ N L+RE LE  G  RVLVVDGGGSLRCA++GGN  + A  NGW GI+VNGC+RD  E++ CDIG+RALA+ P K+ K+G GE+ V + + G  +  G W+Y D DG+L+S  +L
Sbjct:   43 TLKIFEDNSLVREALESPGQGRVLVVDGGGSLRCALVGGNLGLLAEKNGWVGIIVNGCVRDTGELDVCDIGIRALAAHPQKSQKRGAGERDVAVQMPGAVVRPGNWIYVDADGVLVSEEKL 163          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURPS (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei GN=rraA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.036e-34
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGWAGIVVNGC+RD DE+  C +GV ALA+ P K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   43 TLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURP6 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 668) GN=rraA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.036e-34
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGWAGIVVNGC+RD DE+  C +GV ALA+ P K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   43 TLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURP1 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 1710b) GN=rraA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.036e-34
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGWAGIVVNGC+RD DE+  C +GV ALA+ P K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   43 TLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURP0 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 1106a) GN=rraA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.036e-34
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGWAGIVVNGC+RD DE+  C +GV ALA+ P K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   43 TLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of DY256911 vs. ExPASy Swiss-Prot
Match: RRAA_BURMS (Regulator of ribonuclease activity A OS=Burkholderia mallei (strain SAVP1) GN=rraA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.036e-34
Identity = 68/117 (58.12%), Postives = 87/117 (74.36%), Query Frame = 1
Query:    1 TLKVFQFNVLIREFLEEKGNLRVLVVDGGGSLRCAILGGNPVVQAHNNGWAGIVVNGCIRDVDEINGCDIGVRALASRPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 351
            TLK+F+ N L+R  LE+ G  RVLVVDGGGSLRCA++GGN    A  NGWAGIVVNGC+RD DE+  C +GV ALA+ P K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:   43 TLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
The following BLAST results are available for this feature:
BLAST of DY256911 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA2_ARATH1.275e-5382.11Regulator of ribonuclease-like protein 2 OS=Arabid... [more]
RRAA1_ARATH3.709e-5382.11Regulator of ribonuclease-like protein 1 OS=Arabid... [more]
RRAA3_ARATH4.855e-4570.73Regulator of ribonuclease-like protein 3 OS=Arabid... [more]
RRAA_BURM11.849e-3658.20Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_RALEJ1.015e-3454.55Regulator of ribonuclease activity A OS=Ralstonia ... [more]
RRAA_BURPS5.036e-3458.12Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP65.036e-3458.12Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP15.036e-3458.12Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP05.036e-3458.12Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURMS5.036e-3458.12Regulator of ribonuclease activity A OS=Burkholder... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA2DF03ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256911 ID=DY256911; Name=DY256911; organism=Citrus clementina; type=EST; length=1120bp
ACCCTCAAGGTATTTCAATTTAATGTTTTGATTCGTGAGTTTCTTGAGGA
GAAGGGTAATTTAAGAGTTCTTGTTGTAGATGGGGGTGGGAGTTTGCGGT
GCGCTATATTGGGGGGTAACCCTGTCGTACAAGCCCACAATAACGGATGG
GCTGGAATAGTTGTGAATGGGTGTATTAGGGATGTTGATGAAATTAATGG
GTGTGATATTGGTGTGAGAGCACTGGCTTCTCGTCCCATGAAAGCCAATA
AGAAGGGGATTGGGGAGAAACATGTGCCAATAACTATTGGTGGGACAAGA
ATCAGTGATGGCGAATGGCTTTATGCTGACACAGATGGCATCTTGATTTC
TCGGGCAGAGTTATCTGTATGAGTCCTTTCCTTTGCAAATACCAAAACTG
CAGGTGCTTTTCCTGGAATGTATTCCCCTACTATTATGCCTAACTTGTTT
TCCCGAGCCCATTTATTAATTTTAGATGAACTTGTGTGGTGTGTCAAAAA
TCTATCCGACTTCGTTTTGATCTGTTTGTTTATTGCACATCAAATTGGAA
TGTTGTTTCTGGTGATGATGATAATAATGATTCCGATAAGAATAAATTAT
TATTGCTCTTTTGGCCTTTTGAGGGTAGACTCATGAAGTCCTTTGAAAAA
GTAAACCAGTTAAAAAAAAAACAAAAAAGCCAAAACAATTTCCAATCTCC
TACCCAATCTCCACAAAAATTAAACCCTTGGGGCCCCCCCCCGCCCAATT
TAAACTCAAAACCCAGAAAATTTATCCCTTCGGGCCCCATTTCCAACTCC
CTTTACCAATTTCCCCTATATGGGTTTCTATTAAAATTCAGGGCCCCCCT
TTTTAACACCTCGGGTTGGGAAAACCCCGGGCTTTCCCCCATTAACCCCC
TTTGCCCCCCCTCCCCCTTTCCCCCGCGGGGGTAAAAAAGAAAAAGCCCC
CCCCCCTTTCCCCCTTCCAAAAAATTTGCCCCCCCCGGGAATGGGAAAAG
GAAAAATGTGAACCCTTAAAAAATTTTTTAAAAAAATTCCCCCCTTAATT
TTTTTTTTAACACCCCCTTCCTTTTTTTTAACCCCAAAAGGCGCCAAAAA
TCGCGAAAAAAACCCCTTTA
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