DY256922

Overview
NameDY256922
Unique NameDY256922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1284
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY256922_ssr1252 microsatellite DY256922_ssr1252:1252..1261. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY256922 vs. ExPASy Swiss-Prot
Match: Y2992_ARATH (Uncharacterized protein At2g39920 OS=Arabidopsis thaliana GN=At2g39920 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 3.809e-36
Identity = 90/236 (38.14%), Postives = 132/236 (55.93%), Query Frame = 1 
Query:  175 MSAYAHQMXXXXXXXXXXXXXXXXHGSQYTVESGFYMTTFAAVIFXXXXXXXXXXXXXXXXXXAVMLQSCQNRSSGVVELTKSSGDNNYCKLFALHAELNSLEADN-LPKICRGLAIRYIKEGQFARDLNLSIQIVESYFNTLTPSYNGLDVVLMDIDDIFASSSKYSNLLIDRVNVHGYIECIEEAKHLKHMFTLKLFMKLQFKGWPVILFSKKHERKRNATTNLLISAGYRGWS 879
            MSAY H M                 GS+Y++ESG YMT+ AA IF                  + MLQSC+NR+  +VE  +      YCK+ +LH++LNSL+ ++ LP +CR +A+  IK+G + R+LN +IQ+  +YF T+ P  +  DVV++DIDD        +NLL        Y++ IEEAKH K +  L L+ KL+ +G+ ++L S++ E +RNAT   L S GY  WS
Sbjct:    1 MSAYTHPMERELSGLSSRGNSEL--GSRYSIESGCYMTSLAASIFIASLVTFGVLMITLLIALSTMLQSCENRNIAIVEAQRLDESFGYCKILSLHSQLNSLDEESELPLLCRDVALHRIKQGIYLRELNFTIQMALTYFQTIKPMNDNCDVVVIDIDD--------TNLL---EQDSYYMKYIEEAKHQKSILILALYSKLRSQGYSMVLLSRRPETERNATIEQLKSRGYSDWS 223
The following BLAST results are available for this feature:
BLAST of DY256922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2992_ARATH3.809e-3638.14Uncharacterized protein At2g39920 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA2DG10ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256922 ID=DY256922; Name=DY256922; organism=Citrus clementina; type=EST; length=1284bp
TAACTTACTTTTCTGTAGGTTTAATAATGATCGGCAAAAGAAGCTGAGAT
GAGATGCTGTTGTTGGCTCGTAGCATGGTAGATGAATGTTATTGTGACCC
TTCTATCACCCAAAGGGATCTTTAGATATCCTAGCTTTTAACTTGAGCTG
GTGAATGCTGGTTAAATTACCAAAATGTCAGCTTACGCTCATCAAATGGA
GCGGCAGCTCTCCTCCCAGAGTCTCTCGAGTAGAGGAGGCTCTGAGCATG
GAAGCCAATATACGGTTGAGTCCGGGTTCTACATGACAACTTTTGCTGCA
GTAATCTTCATTGGTGGTCTTATAACAGTTGGAGTTCTGTTAATAACCTT
GCTGGTTACATTGGCTGTCATGTTGCAATCCTGTCAAAATAGGAGTTCAG
GAGTTGTTGAACTTACGAAATCAAGCGGTGATAACAATTATTGCAAGCTA
TTTGCTCTACATGCCGAGCTTAACAGCTTGGAAGCAGATAACTTGCCAAA
AATTTGCAGGGGTCTTGCTATTCGATACATCAAAGAAGGACAATTTGCTA
GAGATCTAAACCTTTCAATACAGATTGTTGAAAGCTACTTTAATACTCTT
ACACCATCATACAATGGTCTAGATGTAGTTTTAATGGACATAGATGATAT
TTTCGCTTCAAGTTCCAAGTACAGTAATCTATTAATAGACAGAGTTAATG
TACATGGGTATATTGAGTGCATTGAAGAGGCCAAACATCTGAAGCACATG
TTTACATTGAAACTATTCATGAAACTTCAATTCAAGGGATGGCCTGTGAT
ACTTTTTTCTAAAAAGCATGAGAGAAAAAGAAATGCCACCACAAACCTCC
TTATTTCAGCTGGTTACAGGGGTTGGTCTTCTTGGTTTTGAAGGTTGGAC
ATGAAATGCCAATTGATTACCCCGAAATACTTGTCTAGACCAAGGGCAAA
ATTGCAAAAAAAGGCTTTCCACTTAACTGGTTTTGATTATCAACCGGAAG
GATGCTTTAAATAGGCAAAAATAAAGGAAAACGGGTTTTAAAAAATCCCA
ACCCTTTTTTTTTTAAGTTTTGATATTCAAAAATAAAAAATAAAAAATTT
TCCCCCCCAAACCGAAATTTCTCTTGGGGGGGGGGGGGCCACCATTTATT
TTCCCTTTTTTTTTTTTTTTAAAAAAAAAATTTTTCCCAAAAAGGGGGTT
CTCCCCCCCCCCCCCTAAAAAAATATTTTTTTTTTTTTTTTTTTTTTTAT
TTATATATATATTTTATTTATATTATATCTTTTT
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