DY256934
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 3.149e-83 Identity = 159/292 (54.45%), Postives = 205/292 (70.21%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKVRNR*SE*SPD-RMGNQA*LDTSRKRKFL 933 MLRR RLRREYLYRK+ E +R + EKK ++K AL+E + IPTELR E AL+ ++ +D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I++ E + D +T+RKR FL Sbjct: 1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1) HSP 1 Score: 309.301 bits (791), Expect = 3.149e-83 Identity = 159/292 (54.45%), Postives = 205/292 (70.21%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKVRNR*SE*SPD-RMGNQA*LDTSRKRKFL 933 MLRR RLRREYLYRK+ E +R + EKK ++K AL+E + IPTELR E AL+ ++ +D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I++ E + D +T+RKR FL Sbjct: 1 MLRREARLRREYLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2) HSP 1 Score: 306.22 bits (783), Expect = 2.665e-82 Identity = 157/292 (53.77%), Postives = 204/292 (69.86%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKVRNR*SE*SPD-RMGNQA*LDTSRKRKFL 933 MLRR RLRREYLYRK+ E +R E+K +++ AL+E + IPTELR E AL+ ++ +D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I++ E + D +T+RKR FL Sbjct: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 2.665e-82 Identity = 157/292 (53.77%), Postives = 204/292 (69.86%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKVRNR*SE*SPD-RMGNQA*LDTSRKRKFL 933 MLRR RLRREYLYRK+ E +R E+K +++ AL+E + IPTELR E AL+ ++ +D SH+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GTM EA PHLI F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I++ E + D +T+RKR FL Sbjct: 1 MLRREARLRREYLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 2.665e-82 Identity = 149/264 (56.44%), Postives = 194/264 (73.48%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKV 852 MLRR RLRREYLYRK+ E ER E+K K++ AL+E + IPTELR E AL+ ++ +D +H+DDEY A DPK+++TTSRDPS+ L F KELK VFP AQRMNRG + ++ C+A+ TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D +GT EA PHLI+ F S+LG+R ++IL++LFPVPK D++R+ITFANQ DYISFRHH+Y+K +++EL E+GPRFEL+LY I++ Sbjct: 1 MLRREARLRREYLYRKAREEAERTAQERKDKVRRALEENRLIPTELRREALALQGSLEFDDAGGEGVTNHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTASEAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKT-NHRNVELTEVGPRFELKLYMIRL 260
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: YHPK_CAEEL (Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=2 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 8.594e-73 Identity = 144/292 (49.32%), Postives = 195/292 (66.78%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKVRNR*S-E*SPDRMGNQA*LDTSRKRKFL 933 M+RR RLRRE+++RKSLE K++ L EK+ KI+ AL+ I LR + L + D + + D EY A +DPKI++TTSRDPS+ L F KE+K +FPNAQR+NRG + ++++ +A + TD+++ E RG PDG+++CHLPFGPTA+F + NVV RHDI + GTM E YPHLI DN SKLG R ILKHLFPVPK D+KRIITF+N DYISFRHH+Y+ + + +EL E GPRFEL+ YQIK+ + + D ++ +T+RKR FL Sbjct: 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAIELAKGSDWGGQ-----QYETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDI---PNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTENDGE-VELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_SCHPO (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe GN=imp4 PE=2 SV=1) HSP 1 Score: 259.996 bits (663), Expect = 4.744e-69 Identity = 129/265 (48.68%), Postives = 186/265 (70.19%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRS--HIDDEYANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQI 846 MLRR +R RR+++Y+++ E +E L EK+R +++AL+ K + +L+ E++ L+++ ++ + ++DDEY ER+PK+L+TTSR+PS+ L QF KE++ + PN+ R+NRG V+ ++E RA++ TD+V++HEHRG+PDGL+I HLP+GPT F L NVV RHDI + GTM EAYPHLI +N SKLG+R L LFP PK T R++TFAN DYISFRHHIY K GPK + L E GPRFE++L++I Sbjct: 1 MLRRAVRERRQFIYKRNQELQEAKLNEKRRALRKALEGNKELNKDLQ-EDSQLQKDYKYDESRATQEETETNLDDEYHRLGEREPKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDI---PNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYAKT-GPKQIILSEAGPRFEMKLFEI 260 HSP 2 Score: 21.557 bits (44), Expect = 4.744e-69 Identity = 7/18 (38.89%), Postives = 12/18 (66.67%), Query Frame = 2 Query: 845 LKLGTGDQSEAQIEWVIR 898 + LGT D +A +EW ++ Sbjct: 260 ITLGTVDMVDADVEWKLK 277
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_YARLI (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica GN=IMP4 PE=3 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 2.128e-66 Identity = 128/266 (48.12%), Postives = 181/266 (68.05%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEY-ANATERDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKV 852 M+RR R RREYLYRKSL+ +E +K++++K AL GKP+P ++ ++E LR+ I ++ + IDDEY A + DPK+++TTSRDPS L+QF KE+K +FP + R+NRGG V+ ++ C+ +D++++HEHRGVP + + H P GPTAYF L NVV RHD+ D G M E +PHLI DNF + LG+R ILKHLFP K D+ R+ITFAN+ D+IS R H+Y K + +EL E+GPRFE+RLY +++ Sbjct: 1 MIRRQARERREYLYRKSLQLQEATKIQKRQQLKAALASGKPLPKDVADDEE-LRKTIAYDES----VQDEIDDEYSAMSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPD---TGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVYVKT--REGVELAEVGPRFEMRLYDLRL 256 HSP 2 Score: 21.557 bits (44), Expect = 2.128e-66 Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2 Query: 845 LKLGTGDQSEAQIEW 889 L+LGT + +A +EW Sbjct: 254 LRLGTLENKDADVEW 268
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_DEBHA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii GN=IMP4 PE=3 SV=2) HSP 1 Score: 246.128 bits (627), Expect = 3.619e-66 Identity = 125/266 (46.99%), Postives = 180/266 (67.67%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAALRQEIDLEDENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKV 852 M+R+ R RREYLYRKSLE +E L EK++++K AL GKP+ EL ++ + I E E T IDDEY+ + +PK+L+TTSR+PS L QF KE+K +FPN+ ++NRG VI++++ TC+ + +D++++HEHRG+P L I H P GP+ F L NV RHD+ + IG E+YPHL+ +NF S+LG+R I+KHLFP K D+ R+ITF N D+IS RHH+Y K ++EL E+GPRFE+RLY++++ Sbjct: 1 MIRKQARERREYLYRKSLELQESSLTEKRQQLKAALASGKPLSKELAEDKELQKDFIYDESEQT-----EIDDEYSALSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPE---IGNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYVKT--KDTVELSEVGPRFEMRLYELRL 256 HSP 2 Score: 25.7942 bits (55), Expect = 3.619e-66 Identity = 10/31 (32.26%), Postives = 18/31 (58.06%), Query Frame = 2 Query: 845 LKLGTGDQSEAQIEWVIRLNLTQAESENSLG 937 L+LG D ++++EW +R + +N LG Sbjct: 254 LRLGLLDNKDSEVEWQLRRFIRTGNRKNYLG 284
BLAST of DY256934 vs. ExPASy Swiss-Prot
Match: IMP4_YEAST (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces cerevisiae GN=IMP4 PE=1 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 6.153e-66 Identity = 130/269 (48.33%), Postives = 181/269 (67.29%), Query Frame = 1 Query: 61 MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIKEALQEGKPIPTELRNEEAA---LRQEIDLEDENTAIPRSHIDDEYANATE-RDPKILLTTSRDPSAPLTQFVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKV 852 MLRR R RREYLYRK+ E ++ L +K++ IK+AL +GKP+P EL +E+ R + L++ A +DDEYA + DP+I++TTSRDPS L+QF KE+K +FPNA R+NRG V+ +++ C+ TD+V++HEHRGVP L I H P GPTA F L NVV RHDI + G E PHLI DNF + LG+R ILKHLF PK D++R+ITFAN+ D+IS R H+Y + + +E+ E+GPRFE+RL+++++ Sbjct: 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQSLKESEEA-DDLQVDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVVMRHDI---INAGNQSEVNPHLIFDNFTTALGKRVVCILKHLFNAGPKKDSERVITFANRGDFISVRQHVYVRT--REGVEIAEVGPRFEMRLFELRL 263 HSP 2 Score: 24.6386 bits (52), Expect = 6.153e-66 Identity = 10/30 (33.33%), Postives = 18/30 (60.00%), Query Frame = 2 Query: 845 LKLGTGDQSEAQIEWVIRLNLTQAESENSL 934 L+LGT + +A +EW +R + A ++ L Sbjct: 261 LRLGTLENKDADVEWQLRRFIRTANKKDYL 290 The following BLAST results are available for this feature:
BLAST of DY256934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY256934 ID=DY256934; Name=DY256934; organism=Citrus clementina; type=EST; length=1277bpback to top |