DY256942
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY256942 vs. ExPASy Swiss-Prot
Match: RPB4_MOUSE (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus GN=Polr2d PE=2 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 1.114e-22 Identity = 53/137 (38.69%), Postives = 92/137 (67.15%), Query Frame = 3 Query: 42 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 452 +G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+ Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 141
BLAST of DY256942 vs. ExPASy Swiss-Prot
Match: RPB4_HUMAN (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens GN=POLR2D PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.114e-22 Identity = 53/137 (38.69%), Postives = 92/137 (67.15%), Query Frame = 3 Query: 42 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 452 +G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ + F+ Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 141
BLAST of DY256942 vs. ExPASy Swiss-Prot
Match: RPB4_DICDI (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum GN=polr2d PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.830e-20 Identity = 54/155 (34.84%), Postives = 88/155 (56.77%), Query Frame = 3 Query: 24 PRAFRMSGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDD-------------PMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKF 449 P R +EEE+ LK + AK L+N EVAI+L+H+ + + +N + + F K+L Y ++FSRYKN +++QVR LS+ L EFE+ L NLCPE +EA +++PS+K +D+ ++ +L++LS ++KF Sbjct: 4 PLIKRSGIQEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDIIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLKKM----EDDELQAILDELSNLRKF 154
BLAST of DY256942 vs. ExPASy Swiss-Prot
Match: RPB4_DROME (DNA-directed RNA polymerase II 16 kDa polypeptide OS=Drosophila melanogaster GN=Rpb4 PE=1 SV=5) HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18 Identity = 48/126 (38.10%), Postives = 79/126 (62.70%), Query Frame = 3 Query: 54 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDL 431 +E+AA+L+ EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + + R +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+ Sbjct: 11 DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDI 131
BLAST of DY256942 vs. ExPASy Swiss-Prot
Match: RPB4_SCHPO (DNA-directed RNA polymerase II subunit rpb4 OS=Schizosaccharomyces pombe GN=rpb4 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.785e-11 Identity = 41/133 (30.83%), Postives = 74/133 (55.64%), Query Frame = 3 Query: 54 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIKKFE 452 EE+AA+LK+G EF L E I+++ Q + ++ + ++ V +K++ Y F+R+K +A IL + +FE LG LC E EEA ++PS+ + DD+ ++ +L++LS ++KF+ Sbjct: 7 EEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEI-PMTDVMKKTVAYFNVFARFKTAEATYACERILGN-RFHKFERAQLGTLCCEDAEEARTLIPSLANK---IDDQNLQGILDELSTLRKFQ 134 The following BLAST results are available for this feature:
BLAST of DY256942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY256942 ID=DY256942; Name=DY256942; organism=Citrus clementina; type=EST; length=656bpback to top |