DY256947

Overview
NameDY256947
Unique NameDY256947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length474
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9785 contig Ccv1_Contig9785:4..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY256947 vs. ExPASy Swiss-Prot
Match: UBE12_WHEAT (Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum GN=UBA2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.961e-41
Identity = 75/97 (77.32%), Postives = 90/97 (92.78%), Query Frame = 3
Query:    3 TVWDRCILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 293
            TVWDR  +  N TLREL++WLK+KGLNAYSISCG+ LL+NSMFPRHKER+D+KVVD+AREVAK+E+P YRRHLDVVVACEDD+DND+DIPL+S+YFR
Sbjct:  955 TVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051          
BLAST of DY256947 vs. ExPASy Swiss-Prot
Match: UBE11_WHEAT (Ubiquitin-activating enzyme E1 1 OS=Triticum aestivum GN=UBA1 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.961e-41
Identity = 75/97 (77.32%), Postives = 90/97 (92.78%), Query Frame = 3
Query:    3 TVWDRCILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 293
            TVWDR  +  N TLREL++WLK+KGLNAYSISCG+ LL+NSMFPRHKER+D+KVVD+AREVAK+E+P YRRHLDVVVACEDD+DND+DIPL+S+YFR
Sbjct:  955 TVWDRWTVTGNITLRELLEWLKEKGLNAYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051          
BLAST of DY256947 vs. ExPASy Swiss-Prot
Match: UBE13_WHEAT (Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum GN=UBA3 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.527e-36
Identity = 66/97 (68.04%), Postives = 84/97 (86.60%), Query Frame = 3
Query:    3 TVWDRCILKDNPTLRELIQWLKDKGLNAYSISCGSCLLFNSMFPRHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISIYFR 293
            TVWDR  ++ N TL EL+QW  DKGL AYSISCG+ LL+N+MF RHK+R+ KKVVD+AREVAKV++P YRRHLD+ VACED+++ND+DIPL+S+YFR
Sbjct:  957 TVWDRWSVQGNLTLAELLQWFADKGLTAYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053          
BLAST of DY256947 vs. ExPASy Swiss-Prot
Match: UBA1_CANAL (Ubiquitin-activating enzyme E1 1 (Fragment) OS=Candida albicans GN=UBA1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.037e-11
Identity = 34/96 (35.42%), Postives = 59/96 (61.46%), Query Frame = 3
Query:    6 VWDRCILKDNPTLRELIQWL-KDKGLNAYSISCGSCLLFNSMFP--RHKERMDKKVVDLAREVAKVELPPYRRHLDVVVACEDDEDNDIDIPLISI 284
            +WDR  L  + TL+EL+    K++GL    +S G  LL+ S FP  + K+R+  K+  L +EV+K E+P + ++L   + C+D+E  D+++P I +
Sbjct:  108 IWDRFELNGDITLQELLDHFEKEEGLTISMLSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNLIFEICCDDEEGEDVEVPYICV 203          
The following BLAST results are available for this feature:
BLAST of DY256947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBE12_WHEAT1.961e-4177.32Ubiquitin-activating enzyme E1 2 OS=Triticum aesti... [more]
UBE11_WHEAT1.961e-4177.32Ubiquitin-activating enzyme E1 1 OS=Triticum aesti... [more]
UBE13_WHEAT5.527e-3668.04Ubiquitin-activating enzyme E1 3 OS=Triticum aesti... [more]
UBA1_CANAL8.037e-1135.42Ubiquitin-activating enzyme E1 1 (Fragment) OS=Can... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3AD08ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256947 ID=DY256947; Name=DY256947; organism=Citrus clementina; type=EST; length=474bp
GGACTGTTTGGGACAGATGTATACTTAAAGACAATCCGACCCTAAGGGAG
CTTATCCAATGGCTCAAGGATAAGGGTTTGAATGCTTATAGCATTTCATG
TGGAAGCTGCCTGCTCTTTAATAGTATGTTCCCTCGCCACAAAGAGCGGA
TGGACAAGAAGGTTGTCGATCTGGCTAGGGAAGTGGCCAAAGTTGAATTG
CCTCCCTATCGTCGGCACCTGGATGTTGTTGTGGCGTGCGAGGATGATGA
GGATAATGACATCGACATTCCTCTGATATCAATTTACTTCCGTTAAATGT
TGATTGTCAGGTCGAACTGTGATTGTAGGACGAGACCCTTAATTAATATA
CTGGTTCCGATGTTATGTGGTTGAGTACTGCTTTCTCACGCATAAACGGA
AAGCAACTTTGATATCATATATTCTCTCTATCTGCATATTATCAGTTGGT
TGAATGTGTGCTCGGTAGCAGGGT
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