DY256993

Overview
NameDY256993
Unique NameDY256993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12748 contig Ccv1_Contig12748:524..1080. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY256993 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.503e-13
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:   22 SVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 153
            SVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   68 SVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of DY256993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.503e-1375.00Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3BF07ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY256993 ID=DY256993; Name=DY256993; organism=Citrus clementina; type=EST; length=557bp
GTAAGGACAACGTGTGGGATGAGCGTGTTTCACCCCGGTAGCAACCTTGC
TACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACT
CTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCAT
CATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGT
CACCAACTCACCGGATGAGTTGCCTGCAGTCTGTAGATAGTGTCGTTTCG
TTTTGGATTTCGCAACGTGTCCTTGTCGTTTTTGTTAATGCTATTTGTAT
TACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAATGCTGCTGACTAAAAA
GTAAACCAAAGACTGTGTGATGTTTTATATCATATAATTGTATGTGACGT
GAGGATTGCCTAAGCTTGTGGGCGGAGATGAAAGGTTACTGGTTTTTGGG
TTTAGGACATGTTTTTGATTGTCATTTTGTAAGAGCCAAGATCATCCCTT
CGTGGACGGTCGTGATGAGCATATATGTTTTATTATTAATAAATAAGTTG
CTTCTCT
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