DY257006

Overview
NameDY257006
Unique NameDY257006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1119
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257006 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 546.199 bits (1406), Expect = 1.275e-154
Identity = 277/312 (88.78%), Postives = 280/312 (89.74%), Query Frame = 3
Query:   60 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETXXXXXXXXXXXLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSNYFCKNGNESRDPMRRCVSGIVVAVLKDFFYGDAEEFKQILKEPSFASKKLGS 995
            MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLET           LIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTG                VTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALS YFCKNGNESRDPMRRCVSGIVVA LKDFFYGDAE+F+QILK+PSFA  KL S
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDS 312          
BLAST of DY257006 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 538.11 bits (1385), Expect = 3.472e-152
Identity = 274/312 (87.82%), Postives = 278/312 (89.10%), Query Frame = 3
Query:   60 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETXXXXXXXXXXXLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSNYFCKNGNESRDPMRRCVSGIVVAVLKDFFYGDAEEFKQILKEPSFASKKLGS 995
            MAAMVD+KPAASVQGTPLLATATLPVFTRGIYSTKRITLET           LIIVTPA KGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTG                VTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALS YFCKNGNESRDPMRRCVSGIVVA LKDFF GDAE+F+QILK+PSFA  KL S
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYGFGAVIGLDPVAGTSKTTGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDS 312          
BLAST of DY257006 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.314e-50
Identity = 119/312 (38.14%), Postives = 169/312 (54.17%), Query Frame = 3
Query:   90 ASVQGTPLLATATLPV-FTRGIYSTKRITLETXXXXXXXXXXXLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSK--TTGXXXXXXXXXXXXXXXXVTVIGTGLGGV-ARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSNYFCKNGNESRDPMRRCVSGIVVAVLKDFFYGDAEEFKQILKEPSFASKKL 989
            A+++ +P  ++   P  F  G   T  I ++            + I  P   GT+ V+LF HG  L N  YS + +HIASHG+I+VAPQL   + PP    E++ A  V  W  + L+ +LP +  AN    +++GHSRGG+TAFA++L +         F A+IG+DPVAGT+K   T                 V V+GTGLG      +  CAP   NHEEF+  CK +++AHFVA DYGHMD+LDD+      + ++   CKNG   +  MR  V GIVVA LK   +G+  E + I+K+PS +  KL
Sbjct:    2 AAIEDSPTFSSVVTPAAFEIGSLPTTEIPVDPVENDSTAPPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQL-CKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAGTNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKL 310          
BLAST of DY257006 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.740e-48
Identity = 111/259 (42.86%), Postives = 152/259 (58.69%), Query Frame = 3
Query:  216 LIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSL-RYGFGA------VIGLDPVAGTSK---TTGXXXXXXXXXXXXXXXXVTVIGTGLGGVAR--CITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSNYFCKNGNESRDPMRRCVSGIVVAVLKDFFYGDAEEFKQI 956
            L++ TP  +G + V++ LHG  L N  YS++  H++SHGFI++APQLY SI  P   +E+ S AE+ +WL  GL   LP     N+S  A+ GHSRGG+TAFA++L ++G+ +      +IG+DPV GT K   T                  + VIG+GLG  AR      CAP G NH EFF  C+  +  HFVA DYGH+D+LDD+   ++  + S   CKNG E R PMRR V G+VV+ LK +  GD  E  +I
Sbjct:   45 LLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLY-SIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSNLKISTLIGIDPVDGTGKGKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFRECQGPA-WHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEERR-PMRRFVGGLVVSFLKAYLEGDDRELVKI 299          
BLAST of DY257006 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 3.135e-44
Identity = 109/272 (40.07%), Postives = 154/272 (56.62%), Query Frame = 3
Query:  216 LIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPP--PSATNELNSAAEVAEWLPQGLQ---QNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG-------FGAVIGLDPVAGTS--KTTGXXXXXXXXXXXXXXXXVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSNYFCKNGNESRDPMRRCVSGIVVAVLKDFFYGDAEEFKQILKEPSFASKKL 989
            LII++P   G + V+LF+HGT LSN+ YS  F++IASHGFIVVAP+L+   PP  PS  +E++ AA VA W+P  LQ   Q      E ++  +A+ GHSRGG++AFAL+L +        F A+IG+DPVAG S    T                 VTVIG+GLG       +CAP   +H++F++ CK +S +HFV T YGHMD+L++      +  +S   C      +  MRR + GI+VA L  +F  D  ++  I+   S A   L
Sbjct:   63 LIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGFSNIKLDVTFSALIGVDPVAGRSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNHT---ISCAPNHVSHQQFYDECKENS-SHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNAYFRDDGRQYYAIIANRSLAPTNL 329          
The following BLAST results are available for this feature:
BLAST of DY257006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITSI1.275e-15488.78Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_CITUN3.472e-15287.82Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_ARATH1.314e-5038.14Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH2.740e-4842.86Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL3.135e-4440.07Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3CA04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257006 ID=DY257006; Name=DY257006; organism=Citrus clementina; type=EST; length=1119bp
GGATCTCTTTCAATTGTCTCTCAACAGTACGTTCTCGCGCGGAAAATAAA
ATCACGATAATGGCAGCAATGGTGGACGCCAAGCCTGCAGCTTCAGTGCA
AGGCACTCCCCTTTTGGCTACGGCCACACTTCCGGTATTTACAAGAGGAA
TTTATTCCACAAAACGCATCACGCTGGAGACATCATCTCCATCCTCACCA
CCTCCTCCAAAGCCATTGATTATCGTCACGCCAGCCGGAAAAGGAACTTT
TAATGTCATCTTGTTCCTTCATGGCACTTCTCTCAGCAACAAAAGCTATT
CGAAGATCTTTGACCACATAGCGTCCCATGGATTCATCGTTGTTGCTCCT
CAGCTATACACCAGTATCCCGCCACCAAGTGCAACCAATGAACTTAACAG
CGCAGCAGAAGTCGCGGAGTGGCTACCCCAAGGCCTGCAGCAAAATCTCC
CAGAAAATACTGAAGCGAACGTAAGCTTGGTTGCTGTTATGGGGCACAGT
CGCGGAGGACAAACGGCTTTTGCTCTATCACTACGCTATGGATTCGGTGC
AGTAATAGGGCTAGACCCCGTTGCTGGGACTAGTAAAACCACTGGACTTG
ATCCCTCGATTCTTTCTTTCGACTCTTTCGACTTCTCGATTCCCGTTACT
GTGATTGGCACCGGACTCGGCGGCGTGGCTAGGTGCATCACCGCTTGTGC
ACCTGAAGGAGCAAACCATGAAGAGTTTTTCAACAGATGCAAGAACTCTT
CTCGTGCTCATTTTGTTGCTACAGATTATGGTCACATGGACATTTTGGAT
GATAATCCATCAGACGTAAAGTCTTGGGCGCTTTCGAATTACTTTTGCAA
AAATGGAAACGAATCAAGGGATCCCATGAGAAGATGTGTGAGTGGGATTG
TGGTGGCGGTTCTGAAAGATTTTTTTTATGGTGATGCTGAAGAATTTAAG
CAAATCCTGAAAGAACCCTCTTTTGCTTCTAAAAAGCTTGGATCCGGTGG
AATAACTTGAAGCATCCAGCAATGCTTCCAACAACCTCCGGTAAAAGTTT
TACCAATCTTAAAATTAATTAAAATGTACCTTTAAATTTTTTTGCCCCTT
TTTTTTTTTTTCCAAATTT
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