DY257054

Overview
NameDY257054
Unique NameDY257054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length992
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257054 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.550e-68
Identity = 144/238 (60.50%), Postives = 162/238 (68.07%), Query Frame = 3
Query:   96 MVSPENTNWLLDYPLIDDITVPDGNFSVSASGFTWTVQPPINGPSNGCVEIDSAFGDSNGLXXXXXXXXXXXXXXXXXX-KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST-QPSFL--TXXXXXXXXXXXXXXXXNKLMPFISYPGVAMWQFMPPAAVDTSXDHVLRPPL 797
            MVSPEN NW+ D  LID      G+F++   GF+W VQ PI   SN    +D + G+S                      KACREK RRDRLNDKF+EL +ILEPG PPKTDKAAIL+DAVRMVTQLR EAQKLKDSNSSLQ+KIKELK EKNELRDEKQRLK EKEK+EQQLKAM+  QPSF                    NK++P ISYPGVAMWQFMPPA+VDTS DHVLRPP+
Sbjct:    1 MVSPENANWICD--LID---ADYGSFTIQGPGFSWPVQQPIGVSSNSSAGVDGSAGNSEASKEPGSKKRGRCESSSATSSKACREKQRRDRLNDKFMELGAILEPGNPPKTDKAAILVDAVRMVTQLRGEAQKLKDSNSSLQDKIKELKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPV 233          
BLAST of DY257054 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.449e-63
Identity = 134/235 (57.02%), Postives = 153/235 (65.11%), Query Frame = 3
Query:   96 MVSPENTNWLLDYPLIDDITVPDGNFSVSASGFTWTVQPPINGPSNGCVEIDSAFGDSNGLXXXXXXXXXXXXXXXXXX-KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPSFLTXXXXXXXXXXXXXXXXNKLMPFISYPGVAMWQFMPPAAVDTSXDHVLRPPL 797
            MVSPENTNWL DYPLI+      G FS     F W     I+G +   VE+D    D++ +                   KACREK RRDRLNDKF EL+S+LEPGR PKTDK AI+ DA+RMV Q R EAQKLKD NSSLQEKIKELK EKNELRDEKQ+LK EKE+I+QQLKA+ TQP                    +KL+PF +YPG AMWQFMPPAAVDTS DHVLRPP+
Sbjct:    1 MVSPENTNWLSDYPLIE------GAFSDQNPTFPWQ----IDGSATVSVEVDGFLCDADVIKEPSSRKRIKTESCTGSNSKACREKQRRDRLNDKFTELSSVLEPGRTPKTDKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPV 225          
BLAST of DY257054 vs. ExPASy Swiss-Prot
Match: BH104_ARATH (Transcription factor bHLH104 OS=Arabidopsis thaliana GN=BHLH104 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 9.169e-37
Identity = 83/154 (53.90%), Postives = 107/154 (69.48%), Query Frame = 3
Query:  333 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMSTQPSFLTXXXXXXXXXXXXXXXXNKLMPFISYPGVAMWQFMPPAAVDTSXDHVLRPP 794
            KACRE+LRR++LN++F++L+S+LEPGR PKTDK AIL DA+R++ QLR EA KL+++N  L E+IK LKAEKNELR+EK  LKA+KEK EQQLK+M T PS                   NK+  + SY  + MW +MP +  DTS D  LRPP
Sbjct:  135 KACRERLRREKLNERFMDLSSVLEPGRTPKTDKPAILDDAIRILNQLRDEALKLEETNQKLLEEIKSLKAEKNELREEKLVLKADKEKTEQQLKSM-TAPS------SGFIPHIPAAFNHNKMAVYPSYGYMPMWHYMPQSVRDTSRDQELRPP 281          
BLAST of DY257054 vs. ExPASy Swiss-Prot
Match: BH034_ARATH (Transcription factor bHLH34 OS=Arabidopsis thaliana GN=BHLH34 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 6.571e-35
Identity = 83/157 (52.87%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  333 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQLKAMST-QPSFLTXXXXXXXXXXXXXXXXNKLMPFISY-PGVAMWQFMPPAAVDTSXDHVLRPPL 797
            KACREKLRR++LNDKF++L+S+LEPGR PKTDK+AIL DA+R+V QLR EA +L+++N  L E+IK LKA+KNELR+EK  LKAEKEK+EQQLK+M    P F+                     P+  Y P + MW  +PPA  DTS D    PP+
Sbjct:  167 KACREKLRREKLNDKFMDLSSVLEPGRTPKTDKSAILDDAIRVVNQLRGEAHELQETNQKLLEEIKSLKADKNELREEKLVLKAEKEKMEQQLKSMVVPSPGFMPSQHPAAFHSHKMAV----AYPYGYYPPNMPMWSPLPPADRDTSRDLKNLPPV 319          
BLAST of DY257054 vs. ExPASy Swiss-Prot
Match: BH121_ARATH (Transcription factor bHLH121 OS=Arabidopsis thaliana GN=BHLH121 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.589e-18
Identity = 49/101 (48.51%), Postives = 73/101 (72.28%), Query Frame = 3
Query:  333 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKI----EQQLKAMS 623
            KA REKLRR++LN+ FVEL ++L+P RP K DKA IL D V+++ +L SE  KLK   ++L ++ +EL  EKN+LR+EK  LK++ E +    +Q+L++MS
Sbjct:   63 KAGREKLRREKLNEHFVELGNVLDPERP-KNDKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQEKNDLREEKTSLKSDIENLNLQYQQRLRSMS 162          
BLAST of DY257054 vs. ExPASy Swiss-Prot
Match: BH011_ARATH (Transcription factor bHLH11 OS=Arabidopsis thaliana GN=BHLH11 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.198e-14
Identity = 40/92 (43.48%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  333 KACREKLRRDRLNDKFVELASILEPGRPPKTDKAAILIDAVRMVTQLRSEAQKLKDSNSSLQEKIKELKAEKNELRDEKQRLKAEKEKIEQQ 608
            KA REKLRRD+L ++F+EL + L+P RP K+DKA++L D ++M+  + ++  +LK    +L ++ +EL  EK+ELR+EK  LK++ E +  Q
Sbjct:   49 KAEREKLRRDKLKEQFLELGNALDPNRP-KSDKASVLTDTIQMLKDVMNQVDRLKAEYETLSQESRELIQEKSELREEKATLKSDIEILNAQ 139          
The following BLAST results are available for this feature:
BLAST of DY257054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ILR3_ARATH1.550e-6860.50Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH7.449e-6357.02Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
BH104_ARATH9.169e-3753.90Transcription factor bHLH104 OS=Arabidopsis thalia... [more]
BH034_ARATH6.571e-3552.87Transcription factor bHLH34 OS=Arabidopsis thalian... [more]
BH121_ARATH5.589e-1848.51Transcription factor bHLH121 OS=Arabidopsis thalia... [more]
BH011_ARATH2.198e-1443.48Transcription factor bHLH11 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3DB04ZM1 AbsAOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257054 ID=DY257054; Name=DY257054; organism=Citrus clementina; type=EST; length=992bp
GATTCTCCTCTTTCTTCGAAACTCAACCGCTGTTTGTTTCCCAGGAAAAT
TTCTCTCCGCCGGAAAACCCATAAATATTATCCTGGAAATTCAAAATGGT
TTCTCCGGAAAATACGAATTGGCTATTAGATTACCCCTTGATCGACGATA
TCACTGTCCCTGATGGCAATTTCTCCGTTTCCGCTTCGGGTTTCACTTGG
ACCGTTCAGCCGCCAATTAACGGGCCGTCAAATGGCTGTGTGGAAATTGA
TTCTGCATTTGGGGATTCAAATGGTCTCAAGGAAAGCTCAAAAAAGAGGG
TTAGATCAGAATCATGTGGGTCTTCTAGCTCCAAGGCGTGCAGGGAAAAG
TTGCGTAGGGATCGTCTTAATGACAAGTTTGTGGAGTTAGCCTCTATCTT
AGAGCCTGGAAGGCCCCCCAAAACAGATAAGGCAGCTATTCTGATTGATG
CCGTCCGGATGGTGACTCAATTACGCAGTGAAGCCCAGAAGTTGAAGGAC
TCAAATTCAAGTCTCCAGGAGAAGATCAAAGAGTTGAAGGCTGAGAAGAA
TGAGCTTCGTGATGAGAAGCAGAGGCTAAAGGCAGAGAAAGAGAAGATAG
AGCAGCAACTCAAAGCTATGAGCACACAACCCAGTTTCTTAACTCCTCCT
GCAATCCCTGCTGCATTTGCTGCCCAAGGCCAAGCACCTGGAAACAAGCT
GATGCCTTTCATCAGCTACCCTGGAGTCGCAATGTGGCAATTCATGCCTC
CTGCTGCAGTGGATACCTCACANGATCATGTACTCCGTCCTCCGTTGCTT
AAGTATGCAACCTACAATGATTTGGGGTTGGCATTTGCACCCAACAAGTG
TATTCGTTTTATCATTGGTCTCTAACGGAATTAGTTTTTCCGAAGTCTTT
AATGAATGGTGGGGTAACTGAATTTGAATCTCTCTGTCCCTAGGGATTGG
TGCCTGCTTTTTCCAGGGAAAATTCCAATAAAATTCGTCTCG
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