DY257750

Overview
NameDY257750
Unique NameDY257750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1281
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1029 contig Ccv1_Contig1029:1..1293. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257750 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 3.496e-90
Identity = 181/334 (54.19%), Postives = 215/334 (64.37%), Query Frame = 1
Query:   43 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMRRCVAGIAAAFLKAILMVIGEDFRTMLKDPSSASIELDEGEFFPATRAKT*T 1035
            M A+ DSKP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P EKGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK  C NG + RDPMRRCV+GI  AFLK       EDFR +LKDPS A I+LD  E+  A+   T T
Sbjct:    1 MAAMVDSKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAEKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTT 325          
BLAST of DY257750 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 2.959e-89
Identity = 179/334 (53.59%), Postives = 214/334 (64.07%), Query Frame = 1
Query:   43 MTAVADSKPV-SVEAKPGLATALLSVFSSGPYSPKLKTVNKPWFNSFPP-KPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPP-KGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMRRCVAGIAAAFLKAILMVIGEDFRTMLKDPSSASIELDEGEFFPATRAKT*T 1035
            M A+ D+KP  SV+  P LATA L VF+ G YS K  T+     +S PP KPL IV P  KGT+ VILF HGT+LSN SYS + DH+ASHG+IVVAPQLY  +PP     E+N AA V  WL  GLQ  LPEN EAN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK  C NG + RDPMRRCV+GI  AFLK       EDFR +LKDPS A I+LD  E+  A+   T T
Sbjct:    1 MAAMVDAKPAASVQGTPLLATATLPVFTRGIYSTKRITLETSSPSSPPPPKPLIIVTPAGKGTFNVILFLHGTSLSNKSYSKIFDHIASHGFIVVAPQLYTSIPPPSATNELNSAAEVAEWLPQGLQQNLPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDASSMLTTT 325          
BLAST of DY257750 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.692e-60
Identity = 129/274 (47.08%), Postives = 171/274 (62.41%), Query Frame = 1
Query:  181 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMRRCVAGIAAAFLKAILMVIGEDFRTMLKDPSSASIELD 993
            PPKP+ I  P   GTY V+LFFHG  L N  YS++L+H+ASHGYI+VAPQL   LPP G  EV+DA +V+NW S  L++ LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+LDD+  G   + ++  +C NG++ +  MR  V GI  AFLK  L     + R ++KDPS +  +LD
Sbjct:   41 PPKPVRITCPTVAGTYPVVLFFHGFYLRNYFYSDVLNHIASHGYILVAPQLCKLLPPGGQVEVDDAGSVINWASENLKAHLPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKLD 311          
BLAST of DY257750 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 8.153e-47
Identity = 115/284 (40.49%), Postives = 160/284 (56.34%), Query Frame = 1
Query:  181 PPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPKGNGEVNDAANVLNWLSTGLQSELPENVEANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMRRCVAGIAAAFLKAILMVIGEDFRTM-LKDPSSASIELDEGEF 1005
            PPK L +  P E+G Y V++  HG  L N+ YS L+ H++SHG+I++APQLY    P    E+   A +++WLS GL   LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D+LDD+ +G +  + S  LC NG++ R PMRR V G+  +FLKA L   G+D   + +KD     + ++  EF
Sbjct:   41 PPKQLLVATPVEEGDYPVVMLLHGYLLYNSFYSQLMLHVSSHGFILIAPQLYSIAGPDTMDEIKSTAEIMDWLSVGLNHFLPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFREC-QGPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGLVVSFLKAYLE--GDDRELVKIKDGCHEDVPVEIQEF 314          
BLAST of DY257750 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.880e-43
Identity = 112/303 (36.96%), Postives = 161/303 (53.14%), Query Frame = 1
Query:  106 LLSVFSSGPYSPKLKTVNKPWFNSFPPKPLNIVYPEEKGTYEVILFFHGTALSNTSYSNLLDHLASHGYIVVAPQLYDFLPPK---GNGEVNDAANVLNWLSTGLQSELPE---NVEANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKLLCTNGKKPRDPMRRCVAGIAAAFLKAILMVIGEDFRTMLKDPSSASIEL 990
            +  VF  G +      +    +    P+PL I+ P+E G Y V+LF HGT LSN  YS   +++ASHG+IVVAP+L+   PPK      E++ AA+V NW+   LQ  L      VE +L  +A+ GHSRGG  AF LALG+ +N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP                 CAP + +H+QF+  C   + +HF    YGHMD+L++    P    +S L+C    +P+  MRR + GI  AFL A     G  +  ++ + S A   L
Sbjct:   34 ITDVFHKGNFQVTNNPIRVKRYEFSAPEPLIIISPKEAGVYPVLLFIHGTMLSNEDYSLFFNYIASHGFIVVAPKLFRLFPPKLPSQQDEIDMAASVANWMPLYLQVVLQRYVTGVEGDLEKLAISGHSRGGKSAFALALGF-SNIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNH---TISCAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNAYFRDDGRQYYAIIANRSLAPTNL 329          
The following BLAST results are available for this feature:
BLAST of DY257750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN3.496e-9054.19Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI2.959e-8953.59Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH1.692e-6047.08Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH8.153e-4740.49Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL1.880e-4336.96Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BA05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257750 ID=DY257750; Name=DY257750; organism=Citrus clementina; type=EST; length=1281bp
GCGGGGGTGCACAAACTCAACACACAAACAATTTAGACTACAATGACAGC
AGTAGCCGATAGCAAGCCCGTCTCCGTTGAAGCTAAGCCTGGTTTGGCAA
CGGCCTTACTATCAGTTTTTTCAAGTGGACCTTATTCCCCGAAACTCAAG
ACAGTGAATAAACCATGGTTTAATAGTTTTCCTCCAAAGCCGTTGAATAT
TGTTTATCCAGAAGAAAAAGGAACATATGAAGTTATTTTGTTTTTCCACG
GCACTGCTCTCAGCAACACAAGCTATTCCAATCTCTTAGACCACTTGGCT
TCCCATGGATACATCGTTGTTGCCCCTCAGTTATACGATTTTCTGCCGCC
GAAAGGAAACGGAGAAGTTAACGATGCAGCAAACGTCCTCAACTGGTTAT
CAACAGGCCTTCAATCAGAACTCCCGGAAAATGTTGAAGCTAACCTAAAC
TACGTTGCTCTTATGGGACACAGTCGCGGAGGACTAATAGCGTTCGGTCT
GGCACTTGGCTATGCAACAAATCCTCCAGTTAGCATTAAAATTTCAGCAT
TAGTAGGCATAGACCCAGTTGCGGGGTTAGCCAGCGTTCATAGTGAACTT
GAACCCCCGATTCTCAGTCATGACTCATTCGAGTTCTCAATTCCTGTTAC
TGTAATTGGCACCGGACTCGGTGGTGTGACAAAGTGCATGCAGCCTTGTG
CACCGGAAAACAAAAACCATGAGCAATTTTTCAAGAGGTGTACATATTCA
GATCATGCTCATTTTGATGCTAAGGATTATGGTCACATGGACATTTTAGA
TGATAATCCCCAGGGACCAAAGAATTGGGCAATTTCAAAACTTTTGTGCA
CGAATGGAAAGAAACCAAGGGATCCCATGAGGAGATGTGTTGCTGGCATT
GCTGCGGCTTTTTTGAAGGCTATTTTGATGGTGATTGGTGAAGATTTCAG
GACCATGTTGAAAGACCCTTCTTCTGCCTCGATAGAGCTTGATGAGGGTG
AGTTCTTCCCCGCAACTCGTGCAAAAACCTAAACACTGGCACCACCCATT
TTGACTCATATGCACTTTTCAATTTTGGGGAGGTAAACTTTCCCGAAAAT
GAAGGAAAACCTTAAAAAAACCTAAATAAAAATAAAAAAAACGGGACAAA
AAGGGAACCTTTGGCTAAGGAAGAACCCCTTTTTAAAAAAGGGGATATTA
GGTTTTTTTTTTATTTTCGGGGATTTTTTGGTTTTTTTTTTTTTTTTCCC
CACACATTTTTTTCTTTTTCCTCCAAATTTT
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