DY257817

Overview
NameDY257817
Unique NameDY257817
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1107
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9997 contig Ccv1_Contig9997:4..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257817 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.403e-28
Identity = 62/148 (41.89%), Postives = 94/148 (63.51%), Query Frame = 2 
Query:  104 MLAVFDKSVAKAPEALQSPQT--ESACALKNGLLANHFSSVHPGSVTVNLGSSGVIAYSLNRQNPLLPRLFAVVDDIFCLFQGHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 541
            MLAVF++S+ + P  L  PQ   +   A     +A  F +    S   +L +   +A+S   +NPL PR   V+DD+FC+F G ++N   L++ YGL++ A E +I++EAY+ LRDR PYP DQV+++++GKFAFIL+DS +   FLA
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of DY257817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.403e-2841.89Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1CE12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257817 ID=DY257817; Name=DY257817; organism=Citrus clementina; type=EST; length=1107bp
GGCTGTTAAAACTGCTTGACATTTTTCCATCGAGCGCACGCATCAAAACT
TTTTGTCTTTCTTTTTATCGTGGCCAGTGAAGAACGATCGTGAGGGAGAG
AAAATGCTGGCAGTGTTTGACAAATCGGTGGCCAAAGCCCCAGAGGCTCT
GCAGAGTCCACAGACCGAGTCTGCTTGCGCGCTGAAGAATGGTCTATTGG
CTAACCACTTTAGCTCTGTTCACCCTGGCTCTGTCACTGTGAATCTTGGC
TCTTCTGGCGTCATTGCTTACTCCCTTAACAGGCAAAATCCTCTTTTGCC
AAGATTATTTGCGGTTGTGGATGACATTTTCTGCTTGTTCCAAGGCCACA
TTGAGAACGTTGCTCTGCTTAAGCAGCAATATGGACTAAACAAAACAGCA
AATGAGGTCATCATTGTCATTGAGGCTTACAGAACTCTCAGGGATCGAGG
TCCTTATCCTGCCGATCAGGTTGTCAGAGACATTCAAGGGAAGTTTGCGT
TTATTCTCTATGACAGCTCTTCGAAAAACGCATTCTTAGCTTCTGATGCT
GATGGGAGTGTTCCCTTCTTCTGGGGTACTGATTCTGAAGGCCATCTTGT
TCTTTCCGATGATGTAGAGATTGTGAAGAAGGGCTGTGGGAAGTCTTTTG
CACCATTCCCTAAAGCATGCTTCTTTACATCTTCTGGTGGATTGAGGAGC
TTCGAGCACCCCATGAATGAGCTGAAGCCTGTGCCAAGGGTAGATAGTTC
AGGTCAGGTTTGTGGTTCAACTTTCAAGGTGGATGCTGAGACTAAGAAAG
AAACCGGCATGCCAAGAGTTGGGAGTGCTGCCAACTGGTCCACAAACCTC
TAAGTTCATAACTACAACTTTCCGGGGAGGTTTTTATTANTTATGGGGCC
TTCCGAGGGTTTATTTCATCACTTTTGCAGTTCCCGTTACCATCATATGA
CTTATATGCTTTATTTGGTACCGAGCTTTACATTGGTTTATAAAAGATTT
CATGCAGCAAACTGTGTTGCTTACTATTCAAAACTAACCCCAGGCTTTGG
TGGCATAAAACATGGCAATAATTATTACCTTGGAAAAAGGGGCTTTTTTG
GTTTNGG
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