DY257878

Overview
NameDY257878
Unique NameDY257878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length967
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6379 contig Ccv1_Contig6379:451..1419. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 4.242e-31
Identity = 88/252 (34.92%), Postives = 133/252 (52.78%), Query Frame = 2
Query:   23 TMIVADAYKGLLKISGNST---VLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS----TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDV 739
            T+ V DAYKGL +++       +LL+ E   EG+K    + + +  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D VTKE KVL+  L F NGV LSP++  ++  ET+M R R+ Y+ G   G  + F+E +PG PDNIR    G Y +A AT  +    +  D     PFI+++   +     +       S V  V   G      +DP+   ++ +S A +   +LY GS     I  L +
Sbjct:  122 TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 9.451e-31
Identity = 87/241 (36.10%), Postives = 129/241 (53.53%), Query Frame = 2
Query:   23 TMIVADAYKGLLKISG---NSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS----TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGS 706
            T+ V DAYKGL +++       +LL+ E   EG+K    + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D  TKE KVL+  L F NGV LSP +  ++  E +M R R+FY+ G   G  + F+E LPG PDNIR    G Y +++A   +    +  D     PF++KV   +     +       S V  +   G  +   +DPE   ++ +S A +   HLY GS
Sbjct:  161 TLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGS 401          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.612e-30
Identity = 88/252 (34.92%), Postives = 132/252 (52.38%), Query Frame = 2
Query:   23 TMIVADAYKGLLKISGNST---VLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS----TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDV 739
            T+ V DAYKGL +++       +LL+ E   EG+K    + + V  DG  IYFTD+S+K+  R+Y+L + E   +GRLL +D VTKE KVL+  L F NGV LSP++  ++  ET+M R R+ Y+ G   G  + F+E +PG PDNIR    G Y +A AT  +    +  D     PFI+++   +     +       S V  V   G      +DP+   ++ +S A +   +LY GS     I  L +
Sbjct:  161 TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.591e-30
Identity = 88/256 (34.38%), Postives = 138/256 (53.91%), Query Frame = 2
Query:   23 TMIVADAYKGLLKIS---GNSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDP---EMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH 748
            T+ VADAY GL +++   G + +L++ +   EGQK    + + V  DG  IYFTD+S+K+  R+++  + EG  +GRLL +D VTKE KVL+  L F NGV LSP +  ++  ET+M R R++Y+ G   G  + F+E +PGLPDNIR    G Y +A+        FS   D     P+I+++   ++    +  +    S V  +   G     ++DP    +  +S A +   +LY GS     I  L++ QH
Sbjct:  161 TLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSML-DFLSEKPWIKRMIFKLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL-QH 414          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.971e-29
Identity = 83/255 (32.55%), Postives = 136/255 (53.33%), Query Frame = 2
Query:   23 TMIVADAYKGLLKIS---GNSTVLLT--DEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 745
            T+ VADAY GL K++   G  T L++      G++    + +DV  DG  +YFTD+S+++  R+Y+  I E   +GR+L +D  TKE  VL+ +L FANG+ L PD+  ++  ET+M R R+ ++ G N G ++ F++ LPG PDNIR    G Y +A++       FS   D   + P+I+K+   +     +       S V  +   G  +  ++DP     + +S A +   HLY GS     +  LD+++
Sbjct:  162 TLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSML-DFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLSK 415          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.971e-29
Identity = 68/161 (42.24%), Postives = 99/161 (61.49%), Query Frame = 2
Query:   23 TMIVADAYKGLLKISG---NSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT 487
            T+ VADAYKGL +++       +LL+ E   EG+     + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D VT+E KVL+  L F NGV LSP +  ++  ET+M R R+ Y+ G   G  + F+E +PG PDNIR    G Y + ++T
Sbjct:  162 TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMST 322          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.361e-28
Identity = 80/255 (31.37%), Postives = 136/255 (53.33%), Query Frame = 2
Query:   23 TMIVADAYKGLLKIS---GNSTVLLTDEAE--GQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 745
            T+ VADAY GL +++   G    L++ E    G++    + +DV  DG  +YFTD+S+++  R+++  I E   +GR+L +D  TKE  V++ +L F NG+ L PD+  ++  ET+M R ++ ++ G N G ++ FIE LPG PDNIR    G Y +A++       FS   D   + P+++K+   +     +       S V  +  DG  +  ++DP+    +  S A +   HLY GS     +  LD+++
Sbjct:  161 TLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSML-DFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLSK 414          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.210e-13
Identity = 49/155 (31.61%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   26 MIVADAYKGLLKIS--GNSTVLLTDEAEGQKFKLTDGVDV-ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE-GHYLIA 478
            + VADA  GL  IS  G     +TD  +G+ FK  DG+DV    G++YFT  S+++   + ++ +      G+L  +DP TK   VL+  L  + G  +S D + ++  + +    ++++IKG  AG  E F  ++   PDNI+  G  G++ +A
Sbjct:  111 LYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSN-PDNIKRIGSTGNFWVA 264          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.369e-11
Identity = 48/161 (29.81%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   26 MIVADAYKGLLKIS---GNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 490
            + + D Y  L  +    G++T L T   +G  FK    V V    G++YFTD S  Y  R  + I+D  +    GRL+ +DP TKET +L+ +L+   G  +S D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E
Sbjct:  116 LYIVDCYYHLSVVGSEGGHATQLATS-VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD--KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEE 271          
BLAST of DY257878 vs. ExPASy Swiss-Prot
Match: STSY_RAUMA (Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.369e-11
Identity = 48/161 (29.81%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   26 MIVADAYKGLLKIS---GNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 490
            + + D Y  L  +    G++T L T   +G  FK    V V    G++YFTD S  Y  R  + I+D  +    GRL+ +DP TKET +L+ +L+   G  +S D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E
Sbjct:  114 LYIVDCYYHLSVVGSEGGHATQLATS-VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD--KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEE 269          
The following BLAST results are available for this feature:
BLAST of DY257878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APMAP_RAT4.242e-3134.92Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_BOVIN9.451e-3136.10Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_MOUSE1.612e-3034.92Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_CHICK3.591e-3034.38Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_SALSA3.971e-2932.55Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_HUMAN3.971e-2942.24Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_DANRE3.361e-2831.37Adipocyte plasma membrane-associated protein OS=Da... [more]
STS1_ARATH5.210e-1331.61Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE6.369e-1129.81Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]
STSY_RAUMA6.369e-1129.81Strictosidine synthase (Fragment) OS=Rauvolfia man... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257878 ID=DY257878; Name=DY257878; organism=Citrus clementina; type=EST; length=967bp
CGATCCCGATGCCGATCGTATCACTATGATCGTTGCGGACGCTTACAAGG
GGCTACTGAAAATAAGCGGAAATTCAACAGTGTTGCTAACAGATGAGGCC
GAGGGTCAAAAATTCAAGCTGACGGATGGGGTAGATGTTGCTGATGATGG
CATGATTTATTTTACAGATGCTTCGAATAAATACTACTTAAGGGAATACA
TCCTTGATATTTTTGAGGGAAAGCCTAATGGCAGATTACTAAGCTTTGAT
CCAGTTACCAAGGAAACCAAAGTTCTCGTTTCTGACCTCTACTTTGCTAA
CGGAGTTGTGCTTTCACCAGACCAAACTCATCTCGTTTATTGTGAGACCT
CAATGAGAAGGTGCAGAAAATTTTACATCAAAGGCAAGAACGCTGGACGT
GTGGAGAAGTTCATTGAGACTTTGCCAGGCTTGCCTGATAACATACGTTA
TGATGGAGAAGGCCATTACTTGATTGCATTAGCAACGGAATTTTCGACTT
ACTGGGATCTAGCATACAGATATCCCTTTATCCGAAAGGTTTCAGGAATG
GTGGTGAGATACCTAGGGATGCCACCCATGGGCAAAAGCAGCAGCGGGGT
TTTTATCGTTGACTTGGATGGAAAACCAATTGCTCACTATTATGATCCTG
AAATGTCACTCATTTCCAGTGCAATCAAGATTGGAGATCATCTATACTGT
GGTTCCGTACATCACCGTGGCATTCTTCACCTTGATGTTAATCAACATCC
TGCACGGGCCATTATATGAGCAACTTAGTCTGCAAATATACATGATCATA
AAAGTGCTGGATTCTGCTATACAATGATGACAATTTTGACATTAAAGCAA
ATGCCATGTANCACTGACATTTATTATGGCTCTCCAGCTTGTGAAGATTG
AATAATCCATGACCATGTGATGAAAGTGACTTTTTATTTGAAACCTGACT
TTTCTTTTGTTTTTAGA
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