DY258309

Overview
NameDY258309
Unique NameDY258309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length994
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1080 contig Ccv1_Contig1080:1..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258309 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.740e-22
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 3
Query:  294 PSDP*KKDQAPFFLDFIEHNKKDSSMNTWTPTGQ*QETDNNDFF*ILNTL*GHLVHEPFFVGDNLGHVD*TLIPFY**FYTYDT*EKFSVEAECPKFIPWVKTCSHI*TVA*ALPDENTLFEFVTMMRTYLRLD 695
            PSDP  + QA F+ D+I+    D     WT  G+ QE    DF   L  L G L  +P+F G++ G VD  LI +Y  FY Y+T   FS EAECPKF+ W K C    +VA +LPD+  + EFV ++R    L+
Sbjct:   88 PSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYFGGESFGFVDIALIGYYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of DY258309 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.885e-22
Identity = 54/133 (40.60%), Postives = 79/133 (59.40%), Query Frame = 3
Query:  294 PSDP*KKDQAPFFLDFIEHNKKDSSMNTWTPTGQ*QETDNNDFF*ILNTL*GHLVHEPFFVGDNLGHVD*TLIPFY**FYTYDT*EKFSVEAECPKFIPWVKTCSHI*TVA*ALPDENTLFEFVTMMRTYLRL 692
            PSDP ++ QA F+ D+I+     +    W+  G+ QE    +F  IL TL G L ++ +F GDNLG VD  L+PF   FY+Y+T   FS+EAECPK + W KTC    +V+ +LP  + ++ FV  ++  L L
Sbjct:   87 PSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECPKLVVWAKTCMESESVSKSLPHPHKIYGFVLELKHKLGL 219          
BLAST of DY258309 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.332e-22
Identity = 56/134 (41.79%), Postives = 73/134 (54.48%), Query Frame = 3
Query:  294 PSDP*KKDQAPFFLDFIEHNKKDSSMNTWTPTGQ*QETDNNDFF*ILNTL*GHLVHEPFFVGDNLGHVD*TLIPFY**FYTYDT*EKFSVEAECPKFIPWVKTCSHI*TVA*ALPDENTLFEFVTMMRTYLRLD 695
            PSDP  + QA F+ D+I+    D     W   G+ QE    DF   L  L G L   P+F G++ G VD  LI FY  FY Y+T   FS EAECPKF+ W K C    +VA +LPD+  + EFV ++R    L+
Sbjct:   88 PSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYFGGESFGFVDIALIGFYSWFYAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221          
BLAST of DY258309 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.299e-18
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  294 PSDP*KKDQAPFFLDFIEHNKKDSSMNTWTPTGQ*QETDNNDFF*ILNTL*GHLVHEPFFVGDNLGHVD*TLIPFY**FYTYDT*EKFSVEAECPKFIPWVKTCSHI*TVA*ALPDENTLFEFVTMMRTYLRL 692
            PSDP ++ QA F+ ++I++    +    W+  G+ QE    +F  I  TL G L ++ +F GDNLG VD  L+PF   FY+Y+T   FS+EAEC K + W + C     V+ +LP  + +++FV  ++  L L
Sbjct:   87 PSDPYQRSQARFWANYIDNKIYSTGRRVWSGKGEDQEEAKKEFIEIFKTLEGELGNKTYFGGDNLGFVDVALVPFTSWFYSYETCANFSIEAECRKLVVW-QNCMENERVSKSLPHPHKIYDFVLELKHKLGL 218          
BLAST of DY258309 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.005e-16
Identity = 47/131 (35.88%), Postives = 66/131 (50.38%), Query Frame = 3
Query:  294 PSDP*KKDQAPFFLDFIEHNKKDSSMNTWTPTGQ*QETDNNDFF*ILNTL*GHLVHEPFFVGDNLGHVD*TLIPFY**FYTYDT*EKFSVEAECPKFIPWVKTCSHI*TVA*ALPDENTLFEFVTMMRTYL 686
            PSDP K+ QA F++D+I+    D+    W   G+  E    +   I   L   L  +PF+  D  G VD  LI F   FYTY+T   F +E ECPK + WVK C    TV+  LPD   ++  +  ++  L
Sbjct:   86 PSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEEGKKELISIFKQLEETLTDKPFYGDDTFGFVDLCLITFSSWFYTYETYGNFKMEEECPKLMAWVKRCMERETVSNTLPDAKKVYGLIVELQKTL 216          
The following BLAST results are available for this feature:
BLAST of DY258309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GSTX4_TOBAC3.740e-2241.79Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_TOBAC4.885e-2240.60Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTXC_TOBAC8.332e-2241.79Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX1_NICPL7.299e-1836.84Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTX3_SOYBN4.005e-1635.88Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1AE08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258309 ID=DY258309; Name=DY258309; organism=Citrus clementina; type=EST; length=994bp
AATAAATCAATCCAGATGCGAACCTGTTCCTTGTCATTTACTGCTCCTCA
CTTTTGTAGATCCTGACAGTTGATGATGATTATAAGACCAAATTTTGTAC
ATCCTGACAGTTGATTATGCTTAGAAGATCAATTAAAGAATGGCAGCATT
GTATCTTCAACAATGAACAACATTAAATGTTTGTAACATTAATTAAGATA
GTTTTGTGTCCCTATGAATATTTAATTCCTTTTAAGATTACCCCCTGTAA
TTCTTTTCTATTTTAGGTATGAAATTTGATACTTCATTCGCATCCCTCTG
ATCCCTAAAAGAAAGATCAAGCTCCCTTCTTTCTAGATTTCATTGAGCAT
AATAAGAAAGATTCTTCTATGAATACGTGGACCCCAACGGGACAATAGCA
GGAGACAGATAATAATGATTTCTTTTAAATTCTAAATACCTTATAAGGAC
ACCTTGTACACGAGCCTTTCTTTGTCGGAGACAATCTGGGCCATGTGGAT
TAAACTCTGATCCCATTCTATTGATGATTTTACACTTACGACACATGAGA
AAAGTTCAGCGTCGAGGCTGAGTGCCCCAAGTTCATACCTTGGGTGAAGA
CATGCTCGCATATTTAGACTGTTGCCTAGGCACTTCCTGATGAGAACACA
CTGTTTGAATTTGTTACAATGATGAGAACCTATTTACGATTGGACTATCC
AGAACAACCGACCTACCTACGACCTGATAATTACTCCCCCAGCCACAATC
CGGCTGCCTGCTTATTCTTTACCTGGATTGAGATGGGTTTGCCTTGAGAA
GGGTAAATTCCTATTGTTTTTTTTCCCTAAGTATTCTGCATTTCCCCCAT
TAAAACCCCCCTCCAAAACCTCCCAAGGGACAATAACTTTTTCTCCTTAT
GGTGGTCTCATAGAAAAAAAAAAACCCAACCAGTGTGAATAAAAATTTGA
AATTGGGATCTTTAATTGGCTCTTTTTAAAACACTCCCATCAAA
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