DY258333

Overview
NameDY258333
Unique NameDY258333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1370
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 9.643e-70
Identity = 117/199 (58.79%), Postives = 140/199 (70.35%), Query Frame = 1
Query:  157 MPEKITAENILDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            MP+K   E+++ +LV+  ++ VQK K               RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD++C G LKQ             +GSCCNFLTVLYIGFV AHT
Sbjct:    1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHT 198          

HSP 2 Score: 46.9802 bits (110), Expect = 9.643e-70
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 2
Query:  758 PVLHEKPEHEVDRFLNNVLQHPPNQYKKLDSRFLPKIPQGKF 883
            PVL+E+ E EVD F+++++    + YKKLD+ FL +IP GKF
Sbjct:  200 PVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKF 241          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.081e-31
Identity = 70/155 (45.16%), Postives = 95/155 (61.29%), Query Frame = 1
Query:  289 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++P K+P   +  E F  I + +   +N+A  +L+ I+ G  LK+             +G+  NFLT++YI FV  HT
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHT 205          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.529e-30
Identity = 65/155 (41.94%), Postives = 96/155 (61.94%), Query Frame = 1
Query:  289 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  ++P   +P E F  + +++   +N+A  +L+ I+ G  LK+             +G+  NFLT++YI FV  HT
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHT 205          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.997e-30
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  289 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+SP K+P   +P E    + + +   +N     L++I+ G  LK+             +G C NFLT+ YI  V   T
Sbjct:   72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFT 226          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.431e-28
Identity = 56/155 (36.13%), Postives = 89/155 (57.42%), Query Frame = 1
Query:  289 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++SP K+P   +P E    + + +   +N  +  L++I+ G  +K+             +G C +FLT+ YI  V   T
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFT 222          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 9.277e-28
Identity = 60/155 (38.71%), Postives = 87/155 (56.13%), Query Frame = 1
Query:  289 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++SP  +P   +P +V   + + +   +N    +L+DI+ G  LK+             +GS CNFLT++YI  V   T
Sbjct:   47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFT 201          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.582e-27
Identity = 68/197 (34.52%), Postives = 95/197 (48.22%), Query Frame = 1
Query:  178 ENILDNLVETI-----SDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            E+IL+ +VE I     S  +                   +  RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P   +P +    + + +   +N  L LL++I+ G  +K+             IGSC NFLT+ Y   V   T
Sbjct:    9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFT 205          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.571e-27
Identity = 53/155 (34.19%), Postives = 82/155 (52.90%), Query Frame = 1
Query:  289 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D++CG                  IG+  NF+ +L+IGFV+  T
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQT 176          

HSP 2 Score: 35.8094 bits (81), Expect = 4.571e-27
Identity = 16/45 (35.56%), Postives = 26/45 (57.78%), Query Frame = 2
Query:  758 PVLHEKPEHEVDRFLNNVLQHPPNQYKKLDSRFLPKIPQGKFKGR 892
            PV++E  E +VD     +++     YKK+D+  L KIP+G  K +
Sbjct:  178 PVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNK 222          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 6.440e-21
Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = 1
Query:  289 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+SP  +    +P +      + +   +N A   L+ I+    +K              IG+  +FL++LYI FV  HT
Sbjct:   53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHT 204          
BLAST of DY258333 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.641e-17
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 1
Query:  289 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDISCGGKLKQXXXXXXXXXXXXXIGSCCNFLTVLYIGFVAAHT 753
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D++ G   +              IGS  +  T+LYIG + + T
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVT 178          
The following BLAST results are available for this feature:
BLAST of DY258333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RTNLH_ARATH9.643e-7058.79Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH3.081e-3145.16Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.529e-3041.94Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH1.997e-3039.35Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.431e-2836.13Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH9.277e-2838.71Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.582e-2734.52Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH4.571e-2734.19Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH6.440e-2134.84Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH5.641e-1730.32Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH11FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258333 ID=DY258333; Name=DY258333; organism=Citrus clementina; type=EST; length=1370bp
CACCCCGCCCCACTGCACTATGATTTTATTTNTGACTGAAGNGANCTGNN
CNNNNGAAANATTGATGAGNAATGGTTTTTTATAATGGCAANTTTGTAAA
AAAAAGTTGGTTCAACAGACCCCATTTTTTTCCTTTTTTCTTGAAAGATT
GGAAGAATGCCAGAGAAAATAACAGCAGAGAACATTTTGGACAACCTTGT
GGAAACCATTTCAGATAAGGTTCAAAAGCAGAAAGCTGTATCATTTTTTG
AGGAAGAGACCTCAAGCTCAGTCACTGCTCGTTTCAATCGGCTGTTCGGA
CGCCAGAAACCTGTCCACCATCTTTTGGGCGGTGGAAAATCTGCTGATGT
TTTGTTATGGAGGAACAAGAAGATATCAGCCAGTGTATTAATGGGTGCAA
CAGCAATTTGGGTGCTCTTTGAATGGCTTAACTACCATTTTCTGACCATT
GTATGCTTTGCTTTGGTCCTTGGCATGCTTGCTCAATTTTTTTGGGTAAA
CATTTCGGGCTTATTTAACAGATCACCATCAAAAGTTCCCCGCTTTGTTC
TGCCTCCAGAGGTATTTGCTAACATTGGCACGACAGTTTGTGCTAATGTT
AACGAAGCTCTGGGGCTACTTCAGGACATTTCATGTGGAGGAAAACTGAA
ACAACTTCTTGTGGCTGTAGCAAGCTTGTGGGCTGCTGCTGCGATAGGGA
GCTGTTGTAACTTTTTGACCGTTCTATATATTGGTTTCGTTGCTGCCCAT
ACATTCGCCCGTCCTGCATGAGAAGCCTGAACATGAAGTTGACCGCTTTC
TGAACAATGTCCTCCAGCACCCCCCGAATCAGTACAAGAAGCTTGATTCC
CGTTTCCTCCCCAAAATCCCCCAGGGCAAGTTCAAGGGAAGAAACCCAAT
AAATCGATTGATCCACCTTACCATTTCCTTTCCCCCTGCCCGGACCCGGG
TGGAACCGACCCCCCCCCTGCCCAATTCTAAGGTTACTCGGGCGGAATTC
GGCTTTATCAACAAACATTCCCCCGGGCGATTTAAACAGACCCCCATCCC
CTCCCACCCCCTTTTCCCAAAAAAAAAACAAAAAAACAAAACAACCAACC
CCCCCCTTTCCCTCTCCCCTTCCGGCTTTCCCAAACACTCCCTCCTTTTC
TTCTTTTCTTGCCCCACCCCGCGTCCCTCCCCCATCCAATAAACAACCAT
TCCCTTCCACCCTCCCCCCCCCAACCTCCCCCCATCGCGGCAGCCAATGA
ATTTTCCCGCCGCCCTACCCTCGTGCCCTCCGCCCGCGCGTCCTCTCCGG
CGCCGCGCTTCGTGCTCCAAACATACTCCGCTCCCTCCCCTCTTTTCTGC
AATTCTTGCAAACAACGTAC
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