DY258334

Overview
NameDY258334
Unique NameDY258334
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1077
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXLB1_ARATH (Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 4.626e-45
Identity = 87/174 (50.00%), Postives = 115/174 (66.09%), Query Frame = 1
Query:   82 PALCSSQNTLTSSTATYYGSPDGLGTPTGACGFGGYGRTVNDANEAGVS-RL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDW 600
            P LC S +   +S ATYYGSPD    P G CG+G +GR +N+   +GVS RL NNGTGCG CY  RC +P      GV V+ TD GEGD TDFILSP+ Y  MA      QLYS+GV++VE++ +PCR  G N+++K+HE    P YLA+ +LYV G  D+L  ++W++D K+W
Sbjct:   19 PLLCLSDD-FVNSRATYYGSPDCKANPRGHCGYGEFGRDINNGEVSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEW 191          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXLB1_ORYSJ (Expansin-like B1 OS=Oryza sativa subsp. japonica GN=EXLB1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.266e-26
Identity = 73/227 (32.16%), Postives = 110/227 (48.46%), Query Frame = 1
Query:  112 TSSTATYYGSPDGLGTPTGACGFGGYGRTVNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGDDTDFILSPRIYEIMA-ITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRK--DWVPDNKGFPCSI*HP*STTTSN*FEGSSERNRGGSFVLWQNNAIPKKCKAGSGYEAPIHLEL 783
            T S A YY + D  GT  GAC +G +G T+N+ + +  + L  +G GCG CY  RC  P      GV++++TD G  D TDFILS   +  MA  TD    L + GV+ +E+  V C    +N++FK+ E   +P YL   + Y  G  D++   +          +    G   +   P S   S     SS   RGG   L   N +P+   AG+ Y++ + ++L
Sbjct:   29 TVSRAAYYPNSDIKGTENGACEYGAFGATLNNGDVSASASLYRDGVGCGACYQVRCTNPYYCSPNGVTIVITDSGASDGTDFILSQHAFTRMAQSTDAGTALLTLGVVGIEYRRVSCTYPNKNIVFKITESSNFPNYLEFEIWYQQGNQDIIAVQLCETVNLTCQLLSRTHGAVWAAVSPPSGPLSIRMLFSSGAPRGGDTWLVPTNIVPQNWTAGATYDSGVQVQL 255          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.269e-18
Identity = 53/167 (31.74%), Postives = 85/167 (50.90%), Query Frame = 1
Query:  109 LTSSTATYYGSPDGLGTPTGACGFGGYGRTVNDAN-EAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGDDTDFILSPRIYEIMA--ITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDW 600
            L  S A+Y+ S   L +  GAC +G    +    +  A +  +  +G GCG C+  RC  P++  + G  V+VTD    + TD +LS R +  MA  +    + L   G++DVE++ VPC    +N+  +V E  + P YLA+ +LY  G+ +V+  DI       W
Sbjct:   25 LHRSKASYFSSASALSS--GACAYGPMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQW 189          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.657e-18
Identity = 64/238 (26.89%), Postives = 106/238 (44.54%), Query Frame = 1
Query:  109 LTSSTATYYGSPDGLGTPTGACGFGGYGRTVNDAN-EAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGDDTDFILSPRIYEIMA--ITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDI--------W----RKDRKDWVPDNKGFPCSI*HP*STTTSN*FEGSSERNRGGSFVLWQNNAIPKKCKAGSGYEAPIHL 777
            L  S A Y+ S   L +  GAC +G    +    +  A +  +  +G GCG C+  RC  P++    G  V++TD  + + TD +LS R +  MA  I    + L   G++D+E++ VPC    +N+  +V E  + P YL + +LY  G+ +V+  DI        W    R     WV D    P          T   ++G          ++W  + +P   +AG  Y+A + +
Sbjct:   25 LHRSKAAYFSSASALSS--GACAYGSMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDK--VPTGAIQFRFVVTGG-YDGK---------MIWSQSVLPSNWEAGKIYDAGVQI 248          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.074e-17
Identity = 51/167 (30.54%), Postives = 83/167 (49.70%), Query Frame = 1
Query:  109 LTSSTATYYGSPDGLGTPTGACGFGGYGRTVNDAN-EAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGDDTDFILSPRIYEIMA--ITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDW 600
            L SS A Y+ S   L +  GAC +G         +  A +  +  +G+GCG C+  RC  P +  + G +V+VTD  + + TD +LS R +  MA  +      L   G++D+E+  VPC    + +  +V E  + P YLA+ +LY  G+ +V+   I +     W
Sbjct:   26 LHSSKAAYFSSASALSS--GACAYGSMATGFFAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHW 190          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXLA3_ORYSJ (Expansin-like A3 OS=Oryza sativa subsp. japonica GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.455e-16
Identity = 53/179 (29.61%), Postives = 78/179 (43.58%), Query Frame = 1
Query:   82 PALCSSQNTLTSSTATYYGSPDGLGTPTGACGFGGYGRTVNDAN------EAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDW 600
            P   + +  + +  A Y  SP     P G  G  GYG    +         AG  R    G GCG C+  RC   EV  N GV V++TD+   + TDF+L    +  +A      +L     + VE+  +PC  K +N+   V E  + P  L +  LY  G+ D+L  D+ +    DW
Sbjct:   24 PRASACERCVRNGKAAY--SPSLSPLPPGGGGGCGYGAMAMEMELNGGFLAAGGPRQHRGGLGCGRCFQMRCRNAEVCSNAGVRVVLTDFHRSNSTDFLLGGPAFAGLAKPGMAHKLKKLDALSVEYRRIPCDYKDKNLSILVEEQSKRPNNLVIKFLYQGGQTDILAVDVAQVGSSDW 200          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXPB3_ORYSJ (Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 4.512e-16
Identity = 55/166 (33.13%), Postives = 77/166 (46.39%), Query Frame = 1
Query:  124 ATYYGSPDGLGTPT--GACGFGGYGR-TVNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTD--YGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDWVP 606
            AT+YG+P G G     GACGF    +   +     G   +  +G GCG+CY  RC           +V++TD  Y       F LS   +  MA   + +QL   G+ID++F+ VPC   G  V F V E    P Y AV + Y  G  DV+  D+   + + W P
Sbjct:   47 ATWYGAPTGAGPDDDGGACGFKNTNQYPFSSMTSCGNEPIFKDGKGCGSCYQIRCVNHPACSGNPETVIITDMNYYPVSKYHFDLSGTAFGAMAKPGQNDQLRHAGIIDIQFKRVPCNFPGLKVTFHVEEGSN-PVYFAVLVEYEDGDGDVVQVDLMEANSQSWTP 211          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.512e-16
Identity = 51/163 (31.29%), Postives = 74/163 (45.40%), Query Frame = 1
Query:  118 STATYYGSPDGLGTPTGACGFGGYGRTVNDAN--EAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGDDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDW 600
            S A YY S   L    G+CG+G    T N      A    L   G GCG CY  RC   ++  N G  V+VTD    + T  +LS   +  MA       L     +DVE++ VPC  + +++  +V E  R P  L ++ LY  G+ D++  D+ +     W
Sbjct:   43 SRAAYYTS--SLTLTAGSCGYGTAAATFNGGGFLAAAGPALYRGGVGCGACYQVRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKRVPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSW 203          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXPB5_ORYSJ (Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 7.697e-16
Identity = 72/241 (29.88%), Postives = 106/241 (43.98%), Query Frame = 1
Query:  112 TSSTATYYGSPDGLGTPTGACGFGGY--GRTVNDANEAGVSRL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEG-----DDTDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCRIKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDI--------WRKDRKDW-----VPDNKGFPCSI*HP*STTTSN*FEGSSERNRGGSFVLWQNNAIPKKCKAGSGYEAPIH 774
            +S  AT+YG P G G+  GACG+      R  +    AG   L  NG GCG+CY  +C          V+V++TD   G     +   F +S   +  MA     ++L S GV+ ++++ VPCR    NV FKV      P YLA+ + Y +G  D+    I        W+  ++ W     +  N G P S   P S   ++          G   VL  NN IP   +AG  Y + ++
Sbjct:   46 SSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQIKCTGNRACSGRPVTVVITDSCPGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKIQYKRVPCRF-AMNVAFKVDAGSN-PYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQSWGATWRLNSNTGKPLS--PPFSIRLTS----------GSGKVLVANNVIPSGWQAGLTYRSTVN 272          
BLAST of DY258334 vs. ExPASy Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.820e-15
Identity = 48/148 (32.43%), Postives = 72/148 (48.65%), Query Frame = 1
Query:  166 GACGFGGYGRTVNDANEAGVS-RL*NNGTGCGTCYHDRCAVPEV*PNYGVSVLVTDYGEGDD-TDFILSPRIYEIMAITDKTEQLYSYGVIDVEFETVPCR-IKGQNVMFKVHEDDRYPPYLAVAMLYVSGRYDVLPDDIWRKDRKDW 600
            G+CG+G    + N  + A  S  L   G GCG C+  RC   ++    G  V+VTD     + TD +LS   Y  MA      QL +   +DVE++ VPC    G+N+  +V E  R P  L++  LY  G+ D++  D+      +W
Sbjct:   52 GSCGYGSLAASFNGGHLAAASPALFRGGVGCGACFQVRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYKRVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNW 199          
The following BLAST results are available for this feature:
BLAST of DY258334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
EXLB1_ARATH4.626e-4550.00Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 ... [more]
EXLB1_ORYSJ1.266e-2632.16Expansin-like B1 OS=Oryza sativa subsp. japonica G... [more]
EXLA3_ARATH1.269e-1831.74Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 ... [more]
EXLA1_ARATH1.657e-1826.89Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 ... [more]
EXLA2_ARATH1.074e-1730.54Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 ... [more]
EXLA3_ORYSJ3.455e-1629.61Expansin-like A3 OS=Oryza sativa subsp. japonica G... [more]
EXPB3_ORYSJ4.512e-1633.13Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLA1_ORYSJ4.512e-1631.29Expansin-like A1 OS=Oryza sativa subsp. japonica G... [more]
EXPB5_ORYSJ7.697e-1629.88Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXLA2_ORYSJ3.820e-1532.43Expansin-like A2 OS=Oryza sativa subsp. japonica G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AH12FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258334 ID=DY258334; Name=DY258334; organism=Citrus clementina; type=EST; length=1077bp
GTTCGTACCGCCAACTGAAATGTTTATATTTTGCAGATGGGGTTAAGTTC
ATACTACCTTCTTTACTTCTTGATGCTTTTGCCTGCATTGTGTTCCTCTC
AGAACACATTGACAAGTTCGACAGCTACATACTATGGTAGCCCTGACGGC
TTGGGGACACCAACTGGTGCTTGCGGGTTTGGTGGATATGGAAGAACTGT
AAATGATGCTAACGAGGCCGGTGTGTCGAGGCTTTGAAATAATGGAACTG
GTTGTGGAACTTGCTATCATGACAGATGCGCTGTACCAGAAGTTTAGCCA
AATTATGGGGTGTCCGTGCTGGTGACTGACTATGGTGAAGGAGACGACAC
AGACTTCATCCTCAGCCCACGCATATATGAAATAATGGCAATTACAGATA
AGACAGAACAGCTTTATTCTTATGGTGTCATCGACGTTGAATTCGAGACA
GTCCCTTGCCGGATCAAAGGCCAAAACGTCATGTTCAAGGTCCATGAAGA
CGACAGGTACCCCCCGTACTTGGCCGTAGCCATGCTGTACGTATCTGGCC
GATATGACGTCCTACCAGATGATATATGGCGGAAGGATCGTAAAGACTGG
GTGCCCGATAACAAGGGCTTTCCGTGCAGCATTTGACATCCCTAATCCAC
CACCACGAGCAATTAATTTGAGGGTTCAAGTGAGCGGAATCGCGGTGGCT
CCTTTGTGTTGTGGCAAAACAATGCTATTCCCAAAAAATGCAAAGCTGGG
AGTGGTTATGAAGCCCCCATTCATCTTGAATTAATTTAACATTCCCCAAC
ACTTCATGATAATGGGCCCCAGTTAACCACCTTCTTAGTGTCCTTTACAA
ATTCCAATTAGGTGTTGCCCCACCACCCGGAAGAGCGGTTCCCCTCTCTT
TTTCTCCTTCTTTTTTTTTCCAATTTTGTTGCCTTACCCGCGATTTGGCG
TAAACCCCCCCCCCCCCCAACTTTTACCCAGTTGGCCAAAATAAAATTGG
GGATTTTTACCCTTAATTTCCTCTTTTCTTCTCAACAACAGAACCCCTAA
ACTAAAAAAAAATTCCCCTTCTCTCTC
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