DY258378

Overview
NameDY258378
Unique NameDY258378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1310
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10336 contig Ccv1_Contig10336:347..1656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: YOCS_BACSU (Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis GN=yocS PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.196e-38
Identity = 87/202 (43.07%), Postives = 116/202 (57.43%), Query Frame = 3
Query:  201 MSQYEKIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLFGVI 806
            M    KI       F +WVI+  ++G   PS  TW+ + + TI LG +M  MGLTL  +DF+  +R PW V +G +AQY I P++ F +A  L L A +A G+ILV CCPGG ASNV T+++KGN ALSV +TT ST+ A V+TPLL  L A + +PV    L IS  Q          +   FF K  +K +   PL  VI
Sbjct:    1 MDIIRKISHFAGQTFGIWVIVFAVLGFSFPSLFTWISSYI-TIFLGIIMFGMGLTLQADDFKELVRKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAKGNTALSVAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFFRKQVAKAVHALPLVSVI 201          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP2_RABIT (Ileal sodium/bile acid cotransporter OS=Oryctolagus cuniculus GN=SLC10A2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.185e-18
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            + TI L  +M SMG  +  + F   +R PW + +GFL Q+ I P+ GFV+A+   +    A  ++++ CCPGG ASN+  Y   G++ LSV MTTCST+ A+ M PL
Sbjct:   38 VLTILLALVMFSMGCNVEIKKFLGHIRRPWGIFIGFLCQFGIMPLTGFVLAVAFGIMPIQAVVVLIMGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPL 144          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP2_CRIGR (Ileal sodium/bile acid cotransporter OS=Cricetulus griseus GN=SLC10A2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.069e-17
Identity = 51/133 (38.35%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAI 695
            + TI L  +M SMG  +    F   LR PW + VGFL Q+ I P+ GFV+++   +    A  +++  CCPGG ASN+  Y   G++ LSV MTTCST+ A+ M PL     TK+       ++P D+ G ++
Sbjct:   37 VLTILLALVMFSMGCNVELHKFLGHLRRPWGIVVGFLCQFGIMPLTGFVLSVAFGILPVQAVVVLIQGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIGTSL 169          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP2_HUMAN (Ileal sodium/bile acid cotransporter OS=Homo sapiens GN=SLC10A2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.824e-17
Identity = 48/126 (38.10%), Postives = 74/126 (58.73%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAI 695
            + TI L  +M SMG  +  + F   ++ PW + VGFL Q+ I P+ GF++++   +    A  ++++ CCPGG ASN+  Y   G++ LSV MTTCST+ A+ M PL   LL    + VD+  + I
Sbjct:   37 VLTILLALVMFSMGCNVEIKKFLGHIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLC--LLIYTKMWVDSGSIVI 160          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP2_MOUSE (Ileal sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.062e-17
Identity = 53/170 (31.18%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLFGVI 806
            + TI L  +M SMG  +    F   ++ PW + VGFL Q+ I P+ GF++++   +    A  ++++ CCPGG  SN+  Y   G++ LSV MTTCST+ A+ M PL     TK+       ++P D+ G+++                N  +P+    I+ +  + GVI
Sbjct:   37 VLTILLAMVMFSMGCNVEVHKFLGHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFVYTKMWVDSGTIVIPYDSIGISLVAL---VIPVSFGMFVNHKWPQKAKIILKIGSITGVI 203          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: NTCP2_RAT (Ileal sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 5.306e-17
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAI 695
            + TI L  +M SMG  +    F   ++ PW + VGFL Q+ I P+ GF++++   +    A  ++++ CCPGG  SN+  Y   G++ LSV MTTCST+ A+ M PL     TK+       ++P D+ G+++
Sbjct:   37 VLTILLAMVMFSMGCNVEINKFLGHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIGISL 169          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: SOAT_HUMAN (Solute carrier family 10 member 6 OS=Homo sapiens GN=SLC10A6 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.016e-16
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  312 TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            T + T+ +G LM S+G ++        +R PW + VG L Q+ + P   +++A++  L    A  ++++ CCPGG  SN+ T+   G++ LS+ MTTCST+ A+ M PL
Sbjct:   35 TVVSTVMMGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVLIMGCCPGGTISNIFTFWVDGDMDLSISMTTCSTVAALGMMPL 143          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: SOAT_BOVIN (Solute carrier family 10 member 6 OS=Bos taurus GN=SLC10A6 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.707e-15
Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  333 LGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            +G LM S+G ++  +     +R PW + VG L Q+ + P++ +++ ++  L    A  ++++ CCPGG  SN+ T+   G++ LS+ MTTCST+ A+ M PL
Sbjct:   42 IGLLMFSLGCSVEVQKLWGHIRRPWGIAVGMLCQFGLMPLIAYLLIISFSLKPLQAIAVLIMGCCPGGTVSNIFTFWVDGDMDLSISMTTCSTMAALGMMPL 143          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: SOAT_MOUSE (Solute carrier family 10 member 6 OS=Mus musculus GN=Slc10a6 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.887e-14
Identity = 41/122 (33.61%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  273 IGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            +G+   + +  L T L  + +G +M S G ++  +     LR PW + VG L+Q+ + P+  +++A+   L    A  ++++  CPGG  SNV T+   G++ LS+ MTTCST+ A+ M PL
Sbjct:   22 VGMEGHANLKLLFTVLSAVMVGLVMFSFGCSVESQKLWLHLRRPWGIAVGLLSQFGLMPLTAYLLAIGFGLKPFQAIAVLMMGSCPGGTISNVLTFWVDGDMDLSISMTTCSTVAALGMMPL 143          
BLAST of DY258378 vs. ExPASy Swiss-Prot
Match: SOAT_RAT (Solute carrier family 10 member 6 OS=Rattus norvegicus GN=Slc10a6 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.219e-14
Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  273 IGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638
            +G+    ++  + T L  + +G +M S G ++        LR PW + VG L Q+ + P+  +++A+   L    A  ++++  CPGG  SNV T+   G++ LS+ MTTCST+ A+ M PL
Sbjct:   22 VGMEGQGSLKLVFTVLSAVMVGLVMFSFGCSVESRKLWLHLRRPWGIAVGLLCQFGLMPLTAYLLAIGFGLKPFQAIAVLIMGSCPGGTVSNVLTFWVDGDMDLSISMTTCSTVAALGMMPL 143          
The following BLAST results are available for this feature:
BLAST of DY258378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YOCS_BACSU3.196e-3843.07Uncharacterized sodium-dependent transporter yocS ... [more]
NTCP2_RABIT8.185e-1842.06Ileal sodium/bile acid cotransporter OS=Oryctolagu... [more]
NTCP2_CRIGR1.069e-1738.35Ileal sodium/bile acid cotransporter OS=Cricetulus... [more]
NTCP2_HUMAN1.824e-1738.10Ileal sodium/bile acid cotransporter OS=Homo sapie... [more]
NTCP2_MOUSE4.062e-1731.18Ileal sodium/bile acid cotransporter OS=Mus muscul... [more]
NTCP2_RAT5.306e-1735.34Ileal sodium/bile acid cotransporter OS=Rattus nor... [more]
SOAT_HUMAN2.016e-1635.78Solute carrier family 10 member 6 OS=Homo sapiens ... [more]
SOAT_BOVIN1.707e-1535.29Solute carrier family 10 member 6 OS=Bos taurus GN... [more]
SOAT_MOUSE1.887e-1433.61Solute carrier family 10 member 6 OS=Mus musculus ... [more]
SOAT_RAT3.219e-1432.79Solute carrier family 10 member 6 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BG08FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258378 ID=DY258378; Name=DY258378; organism=Citrus clementina; type=EST; length=1310bp
CGCAAGCTCATCTGGATCTAAGAGGTGGATTATCAGCGATTGATCATGGA
AAAAGTTTGGCAATCGAAAGCAAGCCCCAAAATCACATTGTTGCTCTTGC
AGCTCCCTACTCAATCATTCAAAATTCAAGGTGCTCCCAAGTTTTGTGCA
AGGCAGCAGCAAATGTATCTGGAGATGTTCCAAGTAAATCTCCTGGTGGA
ATGAGCCAGTACGAGAAAATAATTGAAATTTTGACAACACTTTTTCCTGT
GTGGGTCATACTGGGCACCATTATTGGCATCTATAAGCCGAGTGCGGTAA
CATGGTTGGAGACAGACCTTTTCACTATTGGCTTGGGTTTTCTTATGCTT
TCAATGGGATTGACTCTGACCTTTGAAGATTTCAGAAGATGTTTGCGGAA
TCCATGGACTGTCGGTGTTGGATTTCTTGCTCAATATTTGATCAAACCTA
TGTTAGGCTTTGTAATTGCAATGACCCTAAAACTTTCCGCACCCCTTGCT
ACTGGTCTTATTTTGGTCTCATGCTGTCCTGGTGGTCAGGCTTCAAATGT
TGCTACCTATATATCTAAAGGAAATGTAGCACTTTCTGTTCTTATGACAA
CGTGTTCGACTATTGGAGCTATAGTCATGACTCCACTTCTAACTAAGCTT
CTAGCTGGTCAGCTTGTTCCTGTAGATGCTGCAGGGCTGGCTATCAGCAC
TTTTCAAGTCGTGTTAGTACCAACAGTTGTTGGGGTGTTGGCGAATGAAT
TCTTCCCAAAATTCACTTCAAAGATCATCTCCGTGACACCCTTATTTGGT
GTTATTCTTACACCCTTACTTGTGCCAGTCCTATTGGGCAAGTTCAGCTG
TCCTGAAAACTCAAGGAGCACAACTCATTTTTCCAGTGGCGCCTCTTCAT
GCTACTGCTTTTGCTCCTGGTTATTGGTTACAAAGATAACTTTTGGTGAA
ACCACTTCCCGTAACCAATCCAATCGAATGGGGGGAAGCCAAACTCCGCC
CCTTGGAATTTTACCTTGCCCAAAACAATTTCCCAAATCCCCTTGTTTTC
CTTCCCTTTCGGCGGTTAATGGTTGTCCGGCGGGGCCCTTTGGGGGGGAA
GGGCCCTTGCCCCGGGTTTTTGAGAGAAAACCCCCCACTTCTCCGGTTAA
AGAAAAAGGAAAAAACTTCCAAAAAAGAAAAACCCTCTAAAACCCCTTTT
TTCTATTTTCTTCCCCCCACCCCTTTTCATTCCCCCATACAAAAAAAAAA
TATCCCCCTCTTTTTTTATTTAATTTATTAAGAAAAACAATCATTTTTGT
TTTTTCTCCC
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