DY258420

Overview
NameDY258420
Unique NameDY258420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1173
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258420_ssr22 microsatellite DY258420_ssr22:22..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY258420 vs. ExPASy Swiss-Prot
Match: Y3721_ARATH (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.923e-23
Identity = 82/231 (35.50%), Postives = 115/231 (49.78%), Query Frame = 1 
Query:  181 DSAAAMKMDLSSPFGSNSEKLAIPPS----PVKQAATVNAFR-GLGSKEETFFDSQPWLDSDCEDDFYSVNGDFTPSRGNTPVHHNFAGAPQVNSTSLPDKTPG-SISEPSPTGKKPKLAELFRQISKEGSEDQHVDEQNTQGSQNMANGKTEIRTTILDVLPSANGTPYVSGVNSVCSSERTPNGDSMMEDKPMRS---AQCCLPSFVSCRNS-TDRKKKMS---PAIAV 834
            D+ + +   +   F S  +  +IP +    PVK   + ++ +   GSK+ETFFDSQPWL SD +DDF+SVNGDFTPS GNTP        P+ ++    +K P    S P+P  ++ KL ELFR   +E        E+   GS                   SA  TPY+SG NS     R  N  ++ +++  +S      CLP F SC  S  +R+KKMS   P +AV
Sbjct:   34 DNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSSSKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIRE--------EREESGSS------------------SAISTPYLSGANS-----REFNDTAIEKEEKKKSNWHHHRCLPGFSSCGGSFMERRKKMSSETPVVAV 233
The following BLAST results are available for this feature:
BLAST of DY258420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3721_ARATH1.923e-2335.50Uncharacterized protein At3g27210 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1CG03FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258420 ID=DY258420; Name=DY258420; organism=Citrus clementina; type=EST; length=1173bp
GTTTTGTATAATTCACTTTCGCTCTCTCTCTCTCTCTCTTCTGGTGTCTC
TACAGAAGAAGATTTTCTGATGCTAAGAGCGTCGCTGGCTTCTTAGTTTT
ATTATACCTTTTGTCAATTTAAATAAAGAGAATTTAGAGACATGGGTTCG
TGCGTATCATCAGCACACAAGAGAACAGCAGACTCAGCCGCTGCCATGAA
AATGGACTTATCATCACCATTTGGGTCCAATAGTGAGAAGCTTGCGATTC
CACCTTCCCCCGTGAAACAAGCGGCGACAGTCAACGCGTTTAGAGGCCTT
GGTAGTAAAGAGGAAACCTTTTTCGATTCTCAACCATGGCTAGATTCTGA
CTGCGAAGATGATTTTTACAGTGTCAATGGAGATTTTACCCCATCTCGTG
GCAATACTCCAGTCCATCACAACTTTGCAGGGGCTCCTCAAGTCAACAGC
ACTTCTCTTCCGGACAAAACTCCCGGTTCCATTTCTGAACCATCCCCAAC
AGGAAAGAAACCGAAACTAGCTGAACTGTTCCGGCAAATTTCTAAAGAAG
GTTCAGAAGACCAACATGTTGATGAACAAAACACCCAAGGTAGCCAAAAC
ATGGCCAATGGGAAGACAGAAATTAGGACAACTATACTTGATGTACTTCC
ATCAGCAAATGGTACCCCATATGTTTCTGGAGTTAACTCTGTGTGTAGTA
GTGAAAGGACTCCTAATGGAGATTCTATGATGGAGGACAAGCCAATGAGA
TCGGCACAATGTTGCCTTCCAAGCTTTGTATCATGTCGTAATTCTACTGA
CAGGAAGAAGAAGATGAGTCCTGCCATAGCTGTAAATGGTTAACCTTATA
TTTTTGGCACACAAGACTATGTAGATGGGAAAGAAGTGAGCTCAGATGAC
GAATTCAATTTACTCTTCGTCCCCGCTCTGGTAAGTTTATATTACCTTTT
TTAGCCCTCCTGGGATTTTTCGAGTAAAGGAAATGTAAAATGGACCCCAG
GAAGGTTTGAAACAAAGGGACTCCTGGGGGATGGGAAGGGTAAATTACAA
AATAAAAAATTTTACAAACCAAAATCCCTAAAGGGCCCCCTAAAGGAAAC
CCAACCGGTTTAAAAAAACCGGGGGGCTTTTTTATTTCTTTTTGTGGTTT
TCTGTTTTTTTTTTCTTCTTTTT
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