DY258428

Overview
NameDY258428
Unique NameDY258428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length317
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1125 contig Ccv1_Contig1125:1..317. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258428 vs. ExPASy Swiss-Prot
Match: PP262_ARATH (Pentatricopeptide repeat-containing protein At3g29290 OS=Arabidopsis thaliana GN=EMB2076 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.346e-12
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 LYNALIQGMCLRGKFESAKKLYTRMREIGLKPDGKTRALMLQNLQR 138
            LYNA I GMCLR +F+ AK+LY +MRE+GL+PDGKTRA+MLQNL++
Sbjct:  492 LYNAAIHGMCLRREFKFAKELYVKMREMGLEPDGKTRAMMLQNLKK 537
The following BLAST results are available for this feature:
BLAST of DY258428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP262_ARATH1.346e-1269.57Pentatricopeptide repeat-containing protein At3g29... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1CH10FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258428 ID=DY258428; Name=DY258428; organism=Citrus clementina; type=EST; length=317bp
CTTTATAATGCTCTTATTCAAGGAATGTGTTTAAGAGGCAAGTTTGAATC
AGCAAAGAAGCTGTACACAAGAATGCGTGAGATTGGCCTTAAACCGGATG
GCAAAACACGGGCATTGATGCTTCAGAACTTACAGAGAAAGATTTAAACA
AACTTACAGAGAGATTTAAACAAGGACTCACTTAGTTTCGAAGCCCATTA
TAATGCACCAATGTTTGTGGCTTATATCGAATGAAGAACGGTACAAAGAA
GAAAACTTACTGACCTACATTGTACCATAGTTTAAGCAAATTACATGTTC
TTTTATATGTCTGTATA
back to top