DY258461

Overview
NameDY258461
Unique NameDY258461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1313
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.596e-52
Identity = 88/182 (48.35%), Postives = 114/182 (62.64%), Query Frame = 2
Query:  380 FSTHMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKPRQRFAALQLALR*CV*SQHSRK*KK*RQNPKWVKGFPNPKPQTKCLAPSKTIGFK 925
            F+   + ES  R     H+HFLALQLG++ G  V DVGCGIG P REIARFS+S +T L  NE   TRG+E N     + TCNF +ADF+ M FP+N+FDAV+ IEA+CHAPDAY CY+EIYR LKP Q FAA +  +       ++   +K +   +   G P+ +  TKCL   K  GF+
Sbjct:   66 FAQRWKGES-LRESIKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNRLAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEH-QKIKGEIEIGDGLPDIRLTTKCLEALKQAGFE 245          

HSP 2 Score: 72.4034 bits (176), Expect = 9.596e-52
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  189 DVTSGVSEHIDKTQLLSPFEKYENYHVCYACEQEETKTNYSDMDNKNNDLDTPFNDFGREESFHLAHTWK 398
            D+ S +   IDK+ +L+  EKYE YHV +   +EE K NY+DM NK  DL T F ++G  ESFH A  WK
Sbjct:    2 DLASNLGGKIDKSDVLTAVEKYEQYHVFHGGNEEERKANYTDMVNKYYDLATSFYEYGWGESFHFAQRWK 71          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.111e-46
Identity = 80/179 (44.69%), Postives = 105/179 (58.66%), Query Frame = 2
Query:  389 HMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKPRQRFAALQLALR*CV*SQHSRK*KK*RQNPKWVKGFPNPKPQTKCLAPSKTIGFK 925
            H       R     H+HFLALQLG+K G  V DVGCGIG P REIA+FS +S+T L  NE   TRG+E N     + TC+F +ADF+ M F DN FDAV+ IEA+CHAPD   CY+EIYR LKP Q FA  +  +       ++   K+ +   +   G P+ +   +CL  +K  GF+
Sbjct:   74 HRWNGESLRESIKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNRVAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKPGQCFAVYEWCITDHY-EPNNATHKRIKDEIELGNGLPDIRSTQQCLQAAKDAGFE 251          

HSP 2 Score: 68.1662 bits (165), Expect = 1.111e-46
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 3
Query:  168 MPNAETFDVTSGVSEHIDKTQLLSPFEKYENYHVCYACEQEETKTNYSDMDNKNNDLDTPFNDFGREESFHLAHTW 395
            M  +   D+ SG+   I K ++ S  ++YE YH  Y  ++E  K+NY+DM NK  DL T F ++G  ESFH AH W
Sbjct:    1 MSRSGAMDLASGLGGKITKDEVKSAVDEYEKYHGYYGGKEEARKSNYTDMVNKYYDLATSFYEYGWGESFHFAHRW 76          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: SMT1_DICDI (Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 8.197e-23
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 2
Query:  380 FSTHMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKPRQRFAALQ 784
            F+T  + ES F    + H+ ++A QLGL  G  V D+GCG+G P R IARFS +++  L  NE    RG+  N     +  C+F +ADF+ +   DN +D  + IEA+CHAPD    Y+E++R +KP   F   +
Sbjct:   83 FATRHKYES-FEASIARHEMYMAHQLGLFPGMKVIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFMHVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYE 216          

HSP 2 Score: 31.187 bits (69), Expect = 8.197e-23
Identity = 15/30 (50.00%), Postives = 18/30 (60.00%), Query Frame = 3
Query:  297 KTNYSDMDNKNNDLDTPFNDFGREESFHLA 386
            K NY+ M N   DL T F +FG  +SFH A
Sbjct:   55 KNNYTHMVNTFYDLATDFYEFGWGQSFHFA 84          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: ERG6_YARLI (Sterol 24-C-methyltransferase OS=Yarrowia lipolytica GN=ERG6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.562e-21
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 2
Query:  365 GGVIPFSTHMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKP 760
            G    FS + + E+ FR+  + H+H+LA ++G++ G  V DVGCG+G P REIARF+ +++  L  N+    RG   +  +       + + DF+ M FPDN+FDAV+ IEA+ HAP     Y EI+R LKP
Sbjct:   95 GSSFHFSRYYKGEA-FRQATARHEHYLAYKMGIQPGMKVLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGDFMQMDFPDNSFDAVYAIEATVHAPVLEGVYSEIFRVLKP 225          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: ERG6_NEUCR (Sterol 24-C-methyltransferase OS=Neurospora crassa GN=B24P7.240 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.717e-20
Identity = 56/140 (40.00%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  365 GGVIPFSTHMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKPRQRFAALQ 784
            G    F  +   ES ++ + + H+H+LA Q+G+K    V DVGCG+G P REIA+F+ + +T L  N+    R          +    F + DF+ MSFPDN+FDAV+ IEA+ HAP     Y EIYR LKP   F   +
Sbjct:   95 GQCFHFCRYSPGESFYQAI-ARHEHYLAAQIGIKKDMKVLDVGCGVGGPAREIAKFTDAHITGLNNNDYQIDRATHYAVRDGLSGQLKFVKGDFMQMSFPDNSFDAVYAIEATVHAPKLEGVYGEIYRVLKPGGTFGVYE 233          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: ERG6_ASHGO (Sterol 24-C-methyltransferase OS=Ashbya gossypii GN=ERG6 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.655e-18
Identity = 56/140 (40.00%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  365 GGVIPFSTHMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKPRQRFAALQ 784
            G    FS     ES F    + H+H+LA + G+ SG  V DVGCG+G P REIARF+   +  L  N+    +G+  +         ++ + DF+ M FPD  FD V+ IEA+CHAP     Y EIYR LKP   FA  +
Sbjct:   87 GASFHFSRFYTGES-FAMSMARHEHYLAHRAGITSGDLVLDVGCGVGGPAREIARFTGCRVVGLNNNDYQIMKGKHYSRKLGLGDQVSYVKGDFMNMDFPDATFDKVYAIEATCHAPSFEGVYGEIYRVLKPGGVFAVYE 225          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: ERG6_YEAST (Sterol 24-C-methyltransferase OS=Saccharomyces cerevisiae GN=ERG6 PE=1 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 4.814e-18
Identity = 53/140 (37.86%), Postives = 76/140 (54.29%), Query Frame = 2
Query:  365 GGVIPFSTHMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKPRQRFAALQ 784
            G    FS   + ES F    + H+H+LA + G++ G  V DVGCG+G P REIARF+  ++  L  N+    + +        +   +F + DF+ M F +N FD V+ IEA+CHAP     Y EIY+ LKP   FA  +
Sbjct:   86 GSSFHFSRFYKGES-FAASIARHEHYLAYKAGIQRGDLVLDVGCGVGGPAREIARFTGCNVIGLNNNDYQIAKAKYYAKKYNLSDQMDFVKGDFMKMDFEENTFDKVYAIEATCHAPKLEGVYSEIYKVLKPGGTFAVYE 224          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: ERG6_PNECA (Sterol 24-C-methyltransferase OS=Pneumocystis carinii GN=erg6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.642e-18
Identity = 44/129 (34.11%), Postives = 76/129 (58.91%), Query Frame = 2
Query:  398 RESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKPRQRFAALQ 784
            ++  F +  + H+H++AL  G++ G +V DVGCG+G P  +I+ F+ +++  L  N+    R +  +  +  +    F + DF+ M FP+N+FD ++ IEA+ HAP     Y EIYR LKP   +A+ +
Sbjct:  103 KDESFSQAIARHEHYIALHAGIREGETVLDVGCGVGGPACQISVFTGANIVGLNNNDYQIQRAKYYSEKKGLSDKLKFIKGDFMQMPFPENSFDKIYSIEATIHAPSLEGVYSEIYRVLKPGGLYASYE 231          

HSP 2 Score: 21.557 bits (44), Expect = 8.642e-18
Identity = 11/39 (28.21%), Postives = 18/39 (46.15%), Query Frame = 3
Query:  285 QEETKTNYSDMDNKNNDLDTPFNDFGREESFHLAHTWKE 401
            Q+E    Y+ +     +L T F ++G   SFH     K+
Sbjct:   66 QQERFKFYATLTRHYYNLVTDFYEYGWSTSFHFCRFAKD 104          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: ERG6_KLULA (Sterol 24-C-methyltransferase OS=Kluyveromyces lactis GN=ERG6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.186e-16
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  365 GGVIPFSTHMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKPRQRFAALQ 784
            G    FS   + ES F    + H+H+LA + G+K    + DVGCG+G P R I+RF+  ++  L  N+    +          +   +F + DF+ M F +N FD+V+ IEA+CHAP     Y EIY+ LKP   FA  +
Sbjct:   86 GSSFHFSRFFKGES-FSASVARHEHYLAYKAGIKENDLILDVGCGVGGPARTISRFTGCNIIGLNNNDYQIQKANYYAKRDHLDSKLSFVKGDFMKMEFDENTFDSVYAIEATCHAPTFEGVYGEIYKVLKPGGTFAVYE 224          
BLAST of DY258461 vs. ExPASy Swiss-Prot
Match: ERG6_DEBHA (Sterol 24-C-methyltransferase OS=Debaryomyces hansenii GN=ERG6 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.192e-16
Identity = 50/132 (37.88%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  365 GGVIPFSTHMERESHFRRVCSEHDHFLALQLGLKSGHSVWDVGCGIGRP*REIARFSSSSLTELIYNE*HTTRGQEPNPCRREN*TCNFGQADFLIMSFPDNNFDAVFPIEASCHAPDAYVCYQEIYR*LKP 760
            G    FS +   E+ FR+  + H+HFLA ++ +     V DVGCG+G P REI RF+  S+  L  N+    R        + +   +F + DF+ M F   +FDAV+ IEA+ HAP     Y EIY+ LKP
Sbjct:   90 GSSFHFSRYYTGEA-FRQATARHEHFLAHKMQINENMKVLDVGCGVGGPAREICRFTDCSIVGLNNNDYQIERANHYARKYKLDDKLSFVKGDFMQMDFEAESFDAVYAIEATVHAPVLEGVYSEIYKVLKP 220          

HSP 2 Score: 22.7126 bits (47), Expect = 1.192e-16
Identity = 9/35 (25.71%), Postives = 21/35 (60.00%), Query Frame = 3
Query:  282 EQEETKTNYSDMDNKNNDLDTPFNDFGREESFHLA 386
            ++++  ++YS++     +L T F ++G   SFH +
Sbjct:   62 DEDKRLSDYSNLTAHYYNLVTDFYEYGWGSSFHFS 96          
The following BLAST results are available for this feature:
BLAST of DY258461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SMT1_ARATH9.596e-5248.35Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
SMT1_ORYSJ1.111e-4644.69Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
SMT1_DICDI8.197e-2339.26Probable cycloartenol-C-24-methyltransferase 1 OS=... [more]
ERG6_YARLI3.562e-2140.91Sterol 24-C-methyltransferase OS=Yarrowia lipolyti... [more]
ERG6_NEUCR6.717e-2040.00Sterol 24-C-methyltransferase OS=Neurospora crassa... [more]
ERG6_ASHGO1.655e-1840.00Sterol 24-C-methyltransferase OS=Ashbya gossypii G... [more]
ERG6_YEAST4.814e-1837.86Sterol 24-C-methyltransferase OS=Saccharomyces cer... [more]
ERG6_PNECA8.642e-1834.11Sterol 24-C-methyltransferase OS=Pneumocystis cari... [more]
ERG6_KLULA1.186e-1635.71Sterol 24-C-methyltransferase OS=Kluyveromyces lac... [more]
ERG6_DEBHA1.192e-1637.88Sterol 24-C-methyltransferase OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1DE11FM2 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258461 ID=DY258461; Name=DY258461; organism=Citrus clementina; type=EST; length=1313bp
CGTTACATTAAAGACATGTTTGTATTTTTTCATTTAAGCTGTCAGTTCTC
CACTCGGTACATTCCTAAGCTCCTTCATGCTTCACACACAAAAGAAAACG
ACCTATCTCTCTGTTACGAATTCTCCTTCTCTTTTTGCGGCTCTTTCTTC
ATCGGAATAATGCAAGAATGCCAAATGCTGAAACTTTTGATGTGACTTCT
GGAGTGTCCGAACATATTGATAAAACCCAACTGCTCTCCCCCTTCGAAAA
GTATGAGAACTATCATGTCTGTTATGCATGTGAACAGGAAGAGACAAAAA
CTAACTACTCTGACATGGATAATAAAAATAATGATCTTGATACCCCCTTT
AATGACTTCGGCAGGGAGGAGTCATTCCATTTAGCACACACATGGAAAGA
GAGAGTCACTTCAGGAGAGTATGCAGCGAGCATGACCACTTCCTTGCTTT
GCAACTCGGGCTTAAATCTGGGCACAGCGTCTGGGATGTTGGATGTGGAA
TTGGCCGACCCTAGAGAGAAATTGCTCGATTCAGCTCATCATCGCTTACT
GAGCTGATATACAATGAGTAGCATACAACAAGAGGACAGGAACCAAACCC
CTGTCGGCGAGAGAACTAGACCTGCAATTTTGGACAGGCTGACTTCCTGA
TCATGTCCTTTCCGGACAATAACTTTGATGCAGTGTTCCCTATTGAGGCA
AGCTGTCATGCTCCCGATGCATACGTATGCTACCAAGAAATTTACAGATG
ATTAAAACCCCGACAACGTTTTGCTGCATTACAATTGGCGCTTCGCTGAT
GCGTCTGATCCCAACATTCAAGAAAATAAAAAAAATGAAGGCAAAACCCC
AAATGGGTAAAGGGCTTCCCCAACCCAAAACCCCAAACAAAATGCTTAGC
ACCCTCCAAAACAATTGGCTTTAAAAGGCGAACTGGGAAAAAAAAACTTG
CCCCCGAACCCCCCCCCTCCCCCGAAACTTGCCCAATGAAACCCTTCTCC
CTTTTCCAATATTACCTTCCCCCCAAACACCTCCCCACCATTTTTTTTCC
CCAAAAAAATTGGGCAACACCCCCCCACAAATTGGGGGGGAAAACCCCCC
CAAGAGAAAAATTAAAAAAATATAAAAAAATTTTCTTTGATAAACTCTCT
CTCAAAAAAAAAATACACAATTAAAAACGACAAAAAAAAAAAAAATACTT
TTTTTCCCCCCCCCTGGGGCCTCTTTCTTTTTTATTGCGCCCCCCCCCCG
CCCCCACACAACATAGTTGGTGGTGCTAACAACATAATGAAAAAGAAAAA
GAAGCCAAATTCA
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