DY258783

Overview
NameDY258783
Unique NameDY258783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig415 contig Ccv1_Contig415:45..597. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258783 vs. ExPASy Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.097e-16
Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 2
Query:   17 RGQLSRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVKA 283
            RG+L   ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+T+ALE+++ +
Sbjct:   11 RGKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVLSS 97          
BLAST of DY258783 vs. ExPASy Swiss-Prot
Match: NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   38 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 280
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+T+ALE+++K
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of DY258783 vs. ExPASy Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   38 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 280
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+T+ALE+++K
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of DY258783 vs. ExPASy Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.445e-16
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   38 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 277
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVL 95          
BLAST of DY258783 vs. ExPASy Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.702e-15
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   38 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 277
            ++E+RI LCQ          F+E+ Y ELK  NP LPILIRECS ++P+LWARY  G E  + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of DY258783 vs. ExPASy Swiss-Prot
Match: NDUA2_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 2.288e-14
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   38 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 277
            ++E+RI LCQ          F+E+ Y ELK  N  LPILIRECS ++P+LWARY  G E  + L+  +  Q+T+ALE+++
Sbjct:   16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of DY258783 vs. ExPASy Swiss-Prot
Match: NDUA2_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Mus musculus GN=Ndufa2 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 33/80 (41.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:   38 MKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLV 277
            ++E+R+ LCQ          F+ + Y ELK  +P LPILIRECS ++P+LWARY  G EK + L+ L+  ++T+A+++++
Sbjct:   16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLNNLSADEVTRAMQNVL 95          
BLAST of DY258783 vs. ExPASy Swiss-Prot
Match: NDUA2_NEUCR (NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora crassa GN=nuo-10.5 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.639e-12
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 2
Query:    8 MAWRGQLSRSMKELRILLCQXXXXXXXXXXFVERNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQITKALEDLVK 280
            M+ R   ++ +KE+R L CQ          F+ RNY  +K  NP  PILIR+ SG  P+++AR++ G EK   L+GL++ QI + +  LVK
Sbjct:    1 MSGRFAFNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARFEFGKEKSQSLEGLSDQQIEETVSSLVK 91          
The following BLAST results are available for this feature:
BLAST of DY258783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NDUA2_BOVIN1.097e-1646.07NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONPY1.433e-1648.15NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONAB1.433e-1648.15NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MACFA5.445e-1647.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_HUMAN2.702e-1546.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_GORGO2.288e-1445.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MOUSE6.656e-1441.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_NEUCR1.639e-1239.56NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3BG08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258783 ID=DY258783; Name=DY258783; organism=Citrus clementina; type=EST; length=553bp
GAGAGAGATGGCATGGAGAGGACAATTATCTCGGAGCATGAAGGAACTGA
GGATCTTACTCTGCCAGACTTCTCCTTCAAGCTCCTCCACTAGATCCTTT
GTAGAGAGGAACTACAAGGAGTTGAAGACTTTAAACCCCAAACTTCCTAT
CTTGATTCGTGAGTGCAGTGGGATTGAGCCCCAGTTATGGGCTAGATATG
ATATGGGTGTTGAGAAGGGCATTGGTTTGGATGGTCTGAATGAGGCACAG
ATCACAAAGGCACTCGAAGACCTTGTCAAAGCTGGGGAAGCCCTTAAGCG
TTGATATTGCTACTCTTTGATCCATATGAGATGAAATAAATGTGTTAGAA
AAATCTTGATATGACCAGTTTGCTCTTTTGTTTAGCAATCATTTTGATGT
ACTTTGCATGGTTGTCCAATATCTTGATTATTGTCTGCATTAGCATATTA
TACTCTCATCCATATCTTTCAGCTCAATTAGTGCTAATGTAATACCAAAA
TAACACTGATCAGGGATTATCTTTGAGATTAAGACTAANAAAAAAAAAAA
AAA
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