DY258822

Overview
NameDY258822
Unique NameDY258822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.104e-28
Identity = 57/156 (36.54%), Postives = 80/156 (51.28%), Query Frame = 3
Query:    3 KTPL-LMWRRTQEPAGEVDKEVGAAADLLFTL*AYERHST*LFRGGLLSKEMKHL-------MGHCFMHIDVSSCWALILSDAQICRP**E**DVLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446
            + PL L+   T+E A +V+KE   +A  L T+         L+ G  + ++M+ L       +G     ID+    AL LS+ Q      E   +L VGFAE+VE  LE+       M  SAT P W ++   +Y+   LT+DL GDSDQKLADGI
Sbjct:  177 RNPLCLVLAPTRELARQVEKEFRESAPSLDTIC--------LYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLD-EADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGI 323          

HSP 2 Score: 64.3142 bits (155), Expect = 2.104e-28
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 1
Query:  454 YSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANSY 597
            YSI         IIG L+TEHAKGGKCI FTQTKRDADRL++A+A S+
Sbjct:  326 YSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSF 373          

HSP 3 Score: 38.1206 bits (87), Expect = 2.104e-28
Identity = 17/25 (68.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  602 CEPLHGDISHSLRDRTLFAIRDGPF 676
            CE LHGDIS S R+RTL   RDG F
Sbjct:  375 CEALHGDISQSQRERTLAGFRDGHF 399          
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.710e-27
Identity = 54/146 (36.99%), Postives = 75/146 (51.37%), Query Frame = 3
Query:   30 TQEPAGEVDKEVGAAADLLFTL*AYERHST*LFRGGLLSKEMKHL-------MGHCFMHIDVSSCWALILSDAQICRP**E**DVLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446
            T+E A +V+KE   +A  L T+         L+ G  + ++M+ L       +G     ID+    AL LS+ Q      E   +L VGFAE+VE  L++       M  SAT P W ++   +Y+   LTIDL GDSDQKLADGI
Sbjct:  199 TRELARQVEKEFRESAPSLDTIC--------LYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLD-EADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGI 335          

HSP 2 Score: 63.1586 bits (152), Expect = 3.710e-27
Identity = 31/49 (63.27%), Postives = 34/49 (69.39%), Query Frame = 1
Query:  451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANSY 597
            +YSIA        IIG L+ EH KGGKCI FTQTKRDADRLA  +A SY
Sbjct:  337 MYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSY 385          

HSP 3 Score: 36.965 bits (84), Expect = 3.710e-27
Identity = 16/25 (64.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  602 CEPLHGDISHSLRDRTLFAIRDGPF 676
            CE LHGDIS + R+RTL   RDG F
Sbjct:  387 CEALHGDISQAQRERTLAGFRDGNF 411          
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.243e-24
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:  451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANSYS 600
            LYSIA+    +P I+G LI EHA GGKCI FTQTKR+ADRLA+AM  SY+
Sbjct:  304 LYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYA 353          

HSP 2 Score: 50.447 bits (119), Expect = 3.243e-24
Identity = 27/71 (38.03%), Postives = 38/71 (53.52%), Query Frame = 3
Query:  261 VLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGIPPLFHCNQH 473
            +L VGF E+VE  +E    +   M  SAT P W +    +Y+   + IDL GD DQKL +GI      ++H
Sbjct:  241 MLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEH 311          

HSP 3 Score: 35.8094 bits (81), Expect = 3.243e-24
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 2
Query:  602 CEPLHGDISHSLRDRTLFAIRDGPF 676
            C+ LHGDIS + R+RTL   RDG F
Sbjct:  354 CQALHGDISQNQRERTLSGFRDGRF 378          
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 7.814e-21
Identity = 28/48 (58.33%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANS 594
            LY+IAT+ T +  I+  LIT +AKGGK I FTQTKRDAD ++ A++NS
Sbjct:  327 LYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNS 374          

HSP 2 Score: 54.6842 bits (130), Expect = 7.814e-21
Identity = 47/139 (33.81%), Postives = 68/139 (48.92%), Query Frame = 3
Query:   30 TQEPAGEVDKEVGAAADLLFTL*AYERHST*LFRGGLLSKEMKHLMGHCFMHIDVSSCWALILSDAQICRP**E**DVLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446
            T+E A +V+KE+  +A  L T+  Y   S    +   L++ +  ++G     ID+    +L L + +      E   +L VGF E VE  LE        M  SAT P W K    +Y+   L IDL GD D+KLA+GI
Sbjct:  189 TRELAKQVEKEIKESAPYLSTVCVYGGVSY-TIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLD-EADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGI 325          

HSP 3 Score: 31.9574 bits (71), Expect = 7.814e-21
Identity = 15/24 (62.50%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  605 EPLHGDISHSLRDRTLFAIRDGPF 676
            E LHGDIS   R+RTL A R G F
Sbjct:  378 EALHGDISQHQRERTLNAFRQGKF 401          
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 59.6918 bits (143), Expect = 6.217e-20
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   12 LLMWRRTQEPAGEVDKEVGAAADLLFTL*AYERHST*LFRGGLLSKEMKHLMGHCFMHIDVSSCWALILSDAQICRP**E**DVLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446
            +L+   T+E A +V+KE+  +A  L T+  Y   S  + +  L S+ +  ++G     ID+ +  +L L + +      E   +L VGF E+VE  L++   +   M  SAT P W K    RY+   LTIDL GD D+KLA+GI
Sbjct:  183 VLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNAL-SRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLD-EADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGI 325          

HSP 2 Score: 49.2914 bits (116), Expect = 6.217e-20
Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1
Query:  451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANS 594
            LY+I  + T +  ++  LIT +AKGGK I FT+TKRDAD ++ A+ NS
Sbjct:  327 LYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNS 374          

HSP 3 Score: 30.4166 bits (67), Expect = 6.217e-20
Identity = 14/24 (58.33%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  605 EPLHGDISHSLRDRTLFAIRDGPF 676
            E LHGDIS   R+RTL   R G F
Sbjct:  378 EALHGDISQHQRERTLNGFRQGKF 401          
BLAST of DY258822 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.061e-19
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:  451 LYSIATSMTDEP*IIGQLITEHAKGGKCIGFTQTKRDADRLAHAMANSYSL*AFAWGYLTQPE 639
            LYSIA+    +P ++G+LI EHAKGGKCI FTQTKRDADRL++ M  S+   A   G +TQ +
Sbjct:  318 LYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQAL-HGDITQAQ 379          

HSP 2 Score: 50.8322 bits (120), Expect = 2.061e-19
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 3
Query:  261 VLPVGFAENVECALER*ANDLSGMRISATRPPW*KNHDLRYV*TTLTIDLAGDSDQKLADGI 446
            +L VGF E+VE  L+R       +  SAT P W +    +Y+   +TIDL G+ DQKLA+GI
Sbjct:  255 MLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGI 316          
The following BLAST results are available for this feature:
BLAST of DY258822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RH53_ARATH2.104e-2836.54DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH9_ARATH3.710e-2736.99DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
RH53_ORYSJ3.243e-2466.00DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH3_ARATH7.814e-2158.33DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ6.217e-2034.48DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
RH9_ORYSJ2.061e-1955.56DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3CE06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258822 ID=DY258822; Name=DY258822; organism=Citrus clementina; type=EST; length=691bp
GGAAGACGCCCCTTTTGATGTGGCGTCGGACACAAGAACCTGCTGGTGAA
GTTGATAAGGAAGTGGGTGCTGCTGCTGACTTATTGTTTACCCTATGAGC
TTACGAGCGGCACTCTACCTGACTATTTAGAGGTGGGCTCTTGAGTAAGG
AGATGAAGCACCTGATGGGACACTGTTTCATGCATATAGATGTCAGTAGC
TGCTGGGCGCTGATCTTATCCGATGCTCAGATATGCCGGCCCTGATAAGA
ATGATAAGATGTCTTACCAGTCGGCTTTGCAGAAAATGTGGAATGCGCCT
TGGAAAGGTAGGCAAATGATCTATCGGGTATGAGGATATCTGCTACCAGG
CCTCCTTGGTAGAAGAACCACGATCTAAGATACGTCTAGACTACCTTAAC
GATTGATCTTGCTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCTC
CTCTATTCCATTGCAACCAGCATGACTGATGAACCTTAAATTATTGGTCA
GCTTATAACAGAACATGCAAAAGGTGGAAAATGTATTGGTTTCACGCAGA
CAAAACGAGATGCAGACCGCTTGGCTCATGCTATGGCTAACAGTTACTCA
TTGTGAGCCTTTGCATGGGGATATCTCACACAGCCTGAGGGACAGGACCC
TGTTTGCTATCCGAGATGGACCGTTTCGATATACTGAGTGC
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