DY258863

Overview
NameDY258863
Unique NameDY258863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1213
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 1.285e-78
Identity = 144/164 (87.80%), Postives = 153/164 (93.29%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            EAFR+GFNQVFDITSLQIFTP ELD+LLCGRRELWE   LAEHIKFDHGY AKSPAI+NLLEIMGE T DQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1726 EAFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 9.594e-50
Identity = 101/164 (61.59%), Postives = 122/164 (74.39%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            EAFR+GFNQVF I  L+IF   EL+ +LCG  +L+    + +HIKFDHGYT+ SP +  LL+I+ EF  +QQRAF QFVTG+PRLP GGLA L+PKLTIVRKH              S+S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1352 EAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHG-------------SDSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.131e-37
Identity = 86/165 (52.12%), Postives = 104/165 (63.03%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRR-ELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            ++FR GF  VF ++ LQ F P ELD LLCG + + W+   L E  + DHGYT  S A+  L EI+  F  +QQR F QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1839 DSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.644e-33
Identity = 81/164 (49.39%), Postives = 99/164 (60.37%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            EAF+ GF+ VF  TSLQ+ T HEL  L     E W  A L + I  DHGYT +SP I  LL +M +    +QR F QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1495 EAFQNGFSSVFPYTSLQVLTEHELVTLFGTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.592e-28
Identity = 72/164 (43.90%), Postives = 97/164 (59.15%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            +AF  GF++VF    + I  P EL  +     E W  A L  ++  +HGYT  S  I + + I+  F   ++R F QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1331 KAFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 3.108e-24
Identity = 62/157 (39.49%), Postives = 89/157 (56.69%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQIFTPHELDHLLCGRRE-LWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 468
            EAFR GFN+VF +  L  F+  E+  +LCG +   W    +  + +   GYT  SP  +  + ++   + D+++AF QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2465 EAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: UBE3A_HUMAN (Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 3.680e-17
Identity = 60/160 (37.50%), Postives = 86/160 (53.75%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT  S  I    EI+  FT +Q+R F QF TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE + ++L+ AI+  +G
Sbjct:  731 KAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKG 871          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: UPL6_ARATH (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.385e-16
Identity = 59/162 (36.42%), Postives = 80/162 (49.38%), Query Frame = 1
Query:    7 FRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 492
            F  GF Q+     + +F  HEL  L+ G  +  +   L  +  +  GY A    I    E+M  F+ + Q+ F +FVTG  R P  G   L P   I R     A  +ASN       + D LP+  TC N LKLPPY +KE++  KL+YAIS  +  FDLS
Sbjct:  880 FLRGFQQLIPKEWIDMFNEHELQVLISGSVDSLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYLEPAFCIQR-----AAGSASN------ESVDRLPTSATCMNLLKLPPYQSKELLETKLMYAIS-AEAGFDLS 1029          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: UBE3A_MOUSE (Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.385e-16
Identity = 59/160 (36.88%), Postives = 85/160 (53.12%), Query Frame = 1
Query:    1 EAFRAGFNQVFDITSLQ-IFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            +AFR GF+ V + + L+ +F P E++ L+CG R L +  AL E  ++D GYT +S  I    EI+  FT +Q+R F  F TG  R P GGL  L  K+ I +    T                + LP+  TC N L LP YS+KE +  +L+ AI+  +G
Sbjct:  741 KAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNL-DFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGLGKL--KMIIAKNGPDT----------------ERLPTSHTCFNVLLLPEYSSKEKLNVRLLKAITYAKG 881          
BLAST of DY258863 vs. ExPASy Swiss-Prot
Match: YFK7_SCHPO (Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces pombe GN=SPAC167.07c PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.498e-13
Identity = 53/158 (33.54%), Postives = 71/158 (44.94%), Query Frame = 1
Query:    4 AFRAGFNQVFDITSLQIFTPHELDHLLCGRRELWEPAALAEHIKFDHGYTAKSPAIVNLLEIMGEFTPDQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQG 477
            AF  GF Q+ D   L +F   E+  L+ G     +   L  H  +  GY   SP IV   E++ EF  + +R+F +FVT   R P  G   L P   I             NG   +      LP+  TC N LKLP YSTK+ +  KL+ A+  G G
Sbjct:  884 AFTNGFTQIIDPHWLAMFHESEIQILVGGDPVPIDIDDLRRHTVYAGGYEPNSPTIVLFWEVLREFEEEDKRSFVKFVTSVARPPILGFKALMPSFCI-----------RVNGEDETR-----LPTASTCVNLLKLPMYSTKQTLRDKLLTAVRSGVG 1025          
The following BLAST results are available for this feature:
BLAST of DY258863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
UPL3_ARATH1.285e-7887.80E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH9.594e-5061.59E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN7.131e-3752.12Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.644e-3349.39Probable ubiquitin fusion degradation protein C12B... [more]
UFD4_YEAST1.592e-2843.90Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
HECD1_HUMAN3.108e-2439.49E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
UBE3A_HUMAN3.680e-1737.50Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UB... [more]
UPL6_ARATH2.385e-1636.42E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis th... [more]
UBE3A_MOUSE2.385e-1636.88Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ub... [more]
YFK7_SCHPO5.498e-1333.54Probable E3 ubiquitin protein ligase C167.07c OS=S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258863 ID=DY258863; Name=DY258863; organism=Citrus clementina; type=EST; length=1213bp
GAAGCTTTTAGAGCTGGCTTCAATCAGGTCTTTGACATCACATCATTACA
AATATTTACTCCTCATGAATTGGACCATCTGCTTTGTGGCCGTAGAGAGT
TGTGGGAGCCTGCGGCGCTTGCTGAGCATATAAAATTCGATCATGGATAC
ACTGCCAAGAGTCCTGCAATTGTTAACTTACTAGAGATCATGGGAGAATT
CACACCAGATCAGCAGCGTGCCTTCTGTCAGTTTGTTACTGGTGCACCTC
GTCTTCCACCGGGTGGGTTGGCGGTGCTGAATCCAAAGCTTACCATTGTC
AGAAAGCATTCTTCAACTGCACCTAATACAGCATCAAATGGAACCGGGCC
TTCGGAATCAGCGGATGATGACTTGCCAAGTGTCATGACTTGTGCCAATT
ACCTGAAGCTTCCTCCTTACTCTACCAAGGAAATTATGTACAAGAAACTG
GTTTATGCAATAAGCGAAGGGCAGGGATCTTTTGATCTGTCATGAGTTCT
CAAAACTAACCGATGGACCTTTGTATATTAATATATGTGTCATCAAGTCA
ATTCTCTTACCTGGGGATTATTCATCTTTGAAAGTAGCATCATATTTCAG
TCAAATAATGGCTGCTTTTCACTGCCCTTGTATCAATGTTCACATCATTG
GCAAGTTGATTTTTTTTGTTTCAGGTCAGACTTCANGCTGCCACAGTGCC
ACACTCTCTCAACAGAGATTTGAAGAGGGAAATTGTGGAGCAGTTTTTTG
GCTGCTGCTAGGACTTTGTATATAAATAGGAAACTTAGATTTTTTTGTCT
TTTTTTCCCTCCATTGACAAGTTATGGGCTGCCGAGTCGACATAACATGT
ATGGCATAAAAATGAAGGGAAAGGAAAAATAAATTTGTTGAAATGGTATT
GCTTAATTTTAACCTCATATTCTTTTCCAAAAAAAAAAAAAAAAAAAACC
CCACTTTTCCTTGACAAAAGTTTGGCATTATAAAAAAAGCCTTTGCTTTT
TCATATTTTTTTGCACCGAAAAAGGGTCCCTTATCCCGTCAAAAAAAAAA
ATTCCTTTTATTTTGCCCTCCCCACCCTAAAATTCCCCCCAAAAAAGGAG
ATTCCTAATTTAATTGGGGTCCTAAACCTGGTTTTCCCCCCGGGCCCCCC
CCCTCGCGCCCCCGGGCTTTCCCAAAAAAAATCTTTTGTTAAATTGTTAT
TCTTTTGGTTCCC
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