DY258896

Overview
NameDY258896
Unique NameDY258896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1214
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1284 contig Ccv1_Contig1284:1..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 8.959e-56
Identity = 109/155 (70.32%), Postives = 127/155 (81.94%), Query Frame = 2
Query:   59 MGSDS*PERTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELASSL 523
            MGSD+  E++  K +KK  ++LAPIAKPLAGKKL K T  L++ AA  KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+L  EE  KLK DY  V +D+KELA+S+
Sbjct:    1 MGSDTEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 4.784e-33
Identity = 72/153 (47.06%), Postives = 107/153 (69.93%), Query Frame = 2
Query:   53 NKMGSDS*PERTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 511
            NK   +S   +T   YE + + ++ P AKPLA KKL+K  L  V+ A++ K +KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+  +PYI++ SK+DL  AGATKRPT  V ++    K + G+ ++++ K  +  VV++V+ L
Sbjct:    5 NKEHKESKESKTVDNYEAR-MPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_SCHPO (H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces pombe GN=nhp2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.457e-29
Identity = 62/131 (47.33%), Postives = 95/131 (72.52%), Query Frame = 2
Query:  119 SLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 511
            +L PIAKPLA KKL+K  +  V+ A++ K + RGVKEVVK++R+G KGL ++AG+ISP+DVI+H+P+LCE++++PY+Y  SKE L  A  TKRPT CV+++    K ++ + E+   K  Y  ++++V  L
Sbjct:   24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.068e-24
Identity = 59/121 (48.76%), Postives = 80/121 (66.12%), Query Frame = 2
Query:   56 KMGSDS*PERTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 418
            K  S+  PE TP K   + +  L PIAKPLAG+KL+K     V+ A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    6 KEESEEVPE-TPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.301e-24
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 2
Query:   86 TPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 418
            TP K   + +  L P+AKPLAG+KL+K     V+ A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:   15 TPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.861e-23
Identity = 54/121 (44.63%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  104 KKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDK 466
            K+ +V+L PIA+PLA ++L++     ++ A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P+LCE+ ++PY+Y+ SK DL  A  +KRPTC ++V  KP   E  QE  DK
Sbjct:   25 KELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV--KP--HEEYQETYDK 141          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_BOVIN (H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.861e-23
Identity = 50/113 (44.25%), Postives = 79/113 (69.91%), Query Frame = 2
Query:   80 ERTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 418
            ERT H+     +V+L PIA+PLA ++L++     ++ A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+ ++PY+Y+ SK DL  A  +KRPTC ++V
Sbjct:   21 ERTYHEL----LVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFINKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.655e-23
Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 2
Query:  113 IVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 511
            I ++ PIA PLA +KLSK     V+ AA+ K ++RGVKEV K I +G  G+ V AG+  PIDV  H+PI+CE+  +PY YV SK DL ++  +KRPTC +++  KP          D+ K  Y   VE+V  L
Sbjct:   25 IANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP---------HDEYKEAYDECVEEVTSL 146          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 9.997e-23
Identity = 52/119 (43.70%), Postives = 81/119 (68.07%), Query Frame = 2
Query:  128 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYT 484
            PIA PLA +KL+K     V+ A++ K +++G+++V K I++G +G+ +IAG+ +PI+V  H+P++CE++ IPY YV +K+DL  A  +KRPTCCVL+  KP   E  Q   D+   D T
Sbjct:   39 PIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KP--NESYQSSYDECLTDVT 153          
BLAST of DY258896 vs. ExPASy Swiss-Prot
Match: NHP2_CAEBR (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.909e-22
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 2
Query:   86 TPHKYEKKNIVSLA-PIAKPLAGKKLSKGTLGLVRLAAE-HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 433
            T  K E + +  L  PIA+PLA +KL+K    L++ AA   K L+ G+K+V K +R+  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
The following BLAST results are available for this feature:
BLAST of DY258896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NHP2_ARATH8.959e-5670.32H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_YEAST4.784e-3347.06H/ACA ribonucleoprotein complex subunit 2 OS=Sacch... [more]
NHP2_SCHPO2.457e-2947.33H/ACA ribonucleoprotein complex subunit 2 OS=Schiz... [more]
NHP2_XENTR1.068e-2448.76H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_XENLA5.301e-2448.65H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_MOUSE5.861e-2344.63H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]
NHP2_BOVIN5.861e-2344.25H/ACA ribonucleoprotein complex subunit 2 OS=Bos t... [more]
NHP2_DANRE7.655e-2344.36H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_BRABE9.997e-2343.70H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_CAEBR2.909e-2244.07Putative H/ACA ribonucleoprotein complex subunit 2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258896 ID=DY258896; Name=DY258896; organism=Citrus clementina; type=EST; length=1214bp
GAAAAATAAAAACTCAAATCTCTGTTTCGTGCGATTCATTGATAACTGAA
CAAATAAAATGGGAAGCGACAGCTAACCAGAGAGAACCCCTCATAAATAT
GAGAAGAAGAACATTGTTAGTCTTGCTCCCATTGCTAAGCCTCTAGCTGG
AAAGAAGCTCTCCAAAGGAACCCTCGGGCTTGTCCGTCTAGCTGCTGAGC
ACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTATCCGCCGT
GGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAATTGATGT
CATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTCCCTACATTT
ATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAAGAGGCCA
ACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAACTAGGACA
AGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTAGAGGATG
TGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAAAGCCAAC
AAAGATGATTGTGCTTACAGATATGTTTGATTTCGAACCTTCCCTTTCTA
GCTGAGTAATGTACTCTAGTTTTGTCGAATGTAAAATGCAGTTTGCCTCT
GTTGCATGAGATGGTTGGTTTTCATGTCTCATATGTGGGTATATTGCTTT
TATTTTTATTTTTTTAAGAGCAAACTGCGAAATAATCTAATTTTTAGTGC
AAATCCTCTGGAATATTGTTGGTGAGAAAAAAAACCACAAAAAAAAAATA
TTCCCCATGTATAAAAACCCACCTCAAGACTCCATAAACGCTACATTTTT
TCCTTCCAAGATAGTTGCTACCACTTTCTTTTAAAACCCCCTCCCTTAAA
AGAAGAACACCCCCCCCCCCTTCTTTCCCAAGGCATGACCTAAAAAAAAA
TATCTTCCTTCTATTCGCTCCCCCACCACCCCCCCACACCCAAACAAATT
TTATTCTTCCTTCCCCCCCCCGCTACACCCCCCCACACTCGTGGGCGGGG
GGAGGGAGGGGGGCGGTCCCCTTCGCTGCCCGGCCCCCCCCTCCCCGCCC
TTCCCCTCCTCTTCGTTGTCTTTGTCGTTCCTCTCCCACTAAACAAAAAA
AATTATCTTCTTTCCTTCTTTTATCGTTAGCATACTTCATTCCCGCTTCC
GGCGCCCTGATGGT
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