DY259793

Overview
NameDY259793
Unique NameDY259793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length937
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259793_ssr2 microsatellite DY259793_ssr2:2..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY259793 vs. ExPASy Swiss-Prot
Match: Y1686_ARATH (Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.853e-68
Identity = 141/206 (68.45%), Postives = 156/206 (75.73%), Query Frame = 2 
Query:  158 MGSRFPSHQLSNGLYVSGRPEQPKERTPTMSSVAMPYTGGDIKKSGELGKMFDIPVDGSKSRKSGPINNAPSRTGSFGGAASHSGPIMPNAASRXXXXXXXXXXXXXXXXXXXLKKSNSGPLNKHGEPLKKSSGPQSGGVTPSGRQNSGPLAPALPTTGLITSGPISSAPLNSSGGPRKVSGPLDSMGIMKI-PSSVPHNRPSLSL 772
            MGSR+PSHQLSNGL+VSGRPEQPKER PTMS+VAMPYTGGDIK+SGELGKMFDIP DG+KSRKSGPI  APSR+GSF G A  SGP  P A  R                   +KK+NSGPL+KHGEPLKKSSGPQSGGVT   RQNSG + P LP TGLITSGPI+S PLNSSG PRKVSGPLDS G+MK    +V HN+   +L
Sbjct:    1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTKSRKSGPIPGAPSRSGSFAGTA-QSGPGAPMATGR-------MSGSLASAGSVSMKKTNSGPLSKHGEPLKKSSGPQSGGVT---RQNSGSI-PILPATGLITSGPITSGPLNSSGAPRKVSGPLDSSGLMKSHMPTVVHNQAVTTL 194
The following BLAST results are available for this feature:
BLAST of DY259793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1686_ARATH1.853e-6868.45Uncharacterized membrane protein At1g16860 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YD11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259793 ID=DY259793; Name=DY259793; organism=Citrus clementina; type=EST; length=937bp
TTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTGCTACTACTGGTACTGCT
ATAGTCCTGCTACTACTACTTTAACTGGTGAGCTGTGAAAATCGCATCAG
CATTCTGTGAGTGGTCTTTGGTTTGTGGTACTGTGTGGAGTCTTATAGAG
TAGCAAGATGGGTTCCAGGTTCCCATCTCATCAGCTCAGCAATGGCCTTT
ACGTATCAGGCCGGCCAGAGCAACCCAAAGAAAGGACACCAACAATGAGC
TCAGTAGCCATGCCTTATACTGGAGGCGATATAAAAAAATCCGGAGAGCT
AGGGAAAATGTTTGATATTCCTGTTGACGGTTCCAAGTCTAGGAAGTCTG
GACCTATAAATAATGCTCCTTCAAGGACTGGATCTTTTGGTGGTGCTGCT
TCACATTCAGGACCTATCATGCCTAATGCTGCCTCTAGGGCTAGCTACTC
AACGTCAGGTCCTGTCTCTTCTGGAGTCACGTCTGGTTCAGCTTCATTAA
AGAAGTCAAATTCTGGACCACTTAATAAACATGGGGAACCATTAAAGAAG
TCTTCCGGTCCTCAATCTGGAGGAGTGACACCCAGTGGCCGCCAAAACTC
TGGCCCCCTTGCTCCTGCTCTTCCTACTACTGGTCTCATTACTTCTGGAC
CCATCTCTTCAGCCCCACTTAATTCATCTGGGGGCCCCAGGAAAGTGTCT
GGTCCTTTGGACTCTATGGGGATCATGAAAATACCAAGCTCTGTTCCTCA
TAATCGGCCCTCCCTGTCCTTAGCCAAAATAAGACTTTTAACTTAAAAGA
ATTCCCAAACCCAAAATTCGGTTATTGTTTTCCCTTTTTGAAGGGATTAA
AACCGGGGGTTTTATTTCTGAACCAATTCCCAAGCCCTTCCCCCCCTTGT
TGTTGTGGCCCTTTTCCCCGGTTTGCCCCTTTGGTTG
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