DY259838

Overview
NameDY259838
Unique NameDY259838
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1104
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14098 contig Ccv1_Contig14098:454..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.706e-64
Identity = 116/138 (84.06%), Postives = 126/138 (91.30%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            VVAC LLK STGG+ET+AF+LS GV+ WNAVVFEIVMTFGLVYTVYATAVDPKKG++G IAP+AIG IVGANIL GGAFDGASMNPAVSFGPAVVSW WTNHWVYW+GPFIGAAIAAIVYD IFI  N H+PLP+NDF
Sbjct:  115 VVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIGAAIAAIVYDTIFIGSNGHEPLPSNDF 252          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 3.423e-59
Identity = 107/138 (77.54%), Postives = 118/138 (85.51%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            V ACFLL F+TGG    AF LS+GV S NA+VFEIVMTFGLVYTVYATAVDPK G+LGTIAPIAIGFIVGANILAGGAF GASMNPAV+FGPAVVSWTWTNHWVYW GP IG  +A I+YD +FID+NAH+ LP  D+
Sbjct:  116 VAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLIGGGLAGIIYDFVFIDENAHEQLPTTDY 253          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.699e-58
Identity = 108/138 (78.26%), Postives = 118/138 (85.51%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            VVAC LLK +TGG    AF+LS+GV +WNAVVFEIVMTFGLVYTVYATAVDPKKG+LG IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV+  W NHWVYWLGPF+GAAIAA++YD IFI    H  LP  D+
Sbjct:  115 VVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWDNHWVYWLGPFVGAAIAALIYDIIFIGQRPHDQLPTADY 252          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.140e-54
Identity = 101/138 (73.19%), Postives = 114/138 (82.61%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            VVAC +LKF+TGGL   AF LS+GV   NA VFEIVMTFGLVYTVYATA+DPK G+LGTIAPIAIGFIVGANILAGGAF GASMNPAV+FGPAVVSWTWTNHWVYW GP +G  IA ++Y+  FI +  H+ LP  D+
Sbjct:  115 VVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFI-NTTHEQLPTTDY 251          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 2.539e-54
Identity = 104/134 (77.61%), Postives = 113/134 (84.33%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLP 402
            VVAC LLK +TGG    AF+LS+GV + NAVV E+VMTFGLVYTVYATAVDPKKG+LG IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVV+  W NHWVYW+GP  GAAIAA+VYD IFI    HQ LP
Sbjct:  115 VVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWENHWVYWVGPLAGAAIAALVYDIIFIGQRPHQQLP 248          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.788e-53
Identity = 99/137 (72.26%), Postives = 115/137 (83.94%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            VACFLL+FSTGGL T  F L+ GVS W A+V EIVMTFGLVYTVYATAVDPKKG+LGTIAPIAIGFIVGANIL GGAFDGASMNPAVSFGPA+VSW+W + WVYW+GP IG  +A ++Y+ +FI  + H+ LP  D+
Sbjct:  116 VACFLLRFSTGGLATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQWVYWVGPLIGGGLAGVIYEVLFI-SHTHEQLPTTDY 250          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 9.030e-52
Identity = 98/137 (71.53%), Postives = 113/137 (82.48%), Query Frame = 1
Query:    4 VACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            VACFLL+FSTGG  T  F L+ GVS W A+V EIVMTFGLVYTVYATAVDPKKG+LGTIAPIAIGFIVGANIL GGAFDGASMNPAVSFGPA+VSW W   WVYW+GP IG  +A ++Y+ +FI  + H+ LP+ D+
Sbjct:  116 VACFLLRFSTGGQATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWEWGYQWVYWVGPLIGGGLAGVIYELLFI-SHTHEQLPSTDY 250          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.302e-47
Identity = 95/138 (68.84%), Postives = 107/138 (77.54%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            +VA  LL F T      AF LS GV    A+V EIVMTFGLVYTVYATAVDPKKGN+G IAPIAIGFIVGANIL GGAF GASMNPAVSFGPAVVSW+W+NHWVYW GP IG  IA +VY+ +FI ++ H+ LP  D+
Sbjct:  115 IVASALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFI-NSTHEQLPTTDY 250          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 6.697e-47
Identity = 94/138 (68.12%), Postives = 106/138 (76.81%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDDNAHQPLPANDF 414
            +V   LL F T      AF LS GV    A+V EIVMTFGLVYTVYATAVDPKKGN+G IAPIAIGFIVGANIL GGAF GASMNPAVSFGPAVVSW+W+NHWVYW GP IG  IA +VY+ +FI ++ H+ LP  D+
Sbjct:  114 IVCSALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGGIAGLVYEVLFI-NSTHEQLPTTDY 249          
BLAST of DY259838 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.324e-46
Identity = 82/144 (56.94%), Postives = 108/144 (75.00%), Query Frame = 1
Query:    1 VVACFLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWTNHWVYWLGPFIGAAIAAIVYDHIFIDD------NAHQPLPANDF 414
            V A  LL+ +TGG+    FAL+SGV  W+AV+ E VMTFGL+Y  YAT +DPK+G++GTIAP+A+GF++GAN+LAGG FDGA MNPA  FGPA+V W W +HWVYWLGPF+GA +A +VY+++ I        +AHQPL   D+
Sbjct:  119 VAATLLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAVPHAHQPLAPEDY 262          
The following BLAST results are available for this feature:
BLAST of DY259838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TIP13_ARATH2.706e-6484.06Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_ARATH3.423e-5977.54Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP12_ORYSJ1.699e-5878.26Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP11_ARATH1.140e-5473.19Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_MAIZE2.539e-5477.61Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ORYSJ4.788e-5372.26Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE9.030e-5271.53Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP1_MEDTR2.302e-4768.84Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA6.697e-4768.12Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP31_MAIZE3.324e-4656.94Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259838 ID=DY259838; Name=DY259838; organism=Citrus clementina; type=EST; length=1104bp
GTTGTTGCTTGCTTTCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATC
GGCATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTG
AGATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTG
GATCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTGCAATCGGTTT
CATTGTTGGTGCCAACATTTTGGCTGGTGGCGCTTTTGATGGTGCATCAA
TGAACCCAGCAGTCTCTTTTGGTCCTGCTGTGGTTAGCTGGACTTGGACT
AACCACTGGGTCTACTGGCTTGGACCATTTATTGGTGCCGCGATTGCGGC
CATTGTTTACGACCACATCTTCATCGATGACAACGCTCACCAGCCACTTC
CTGCCAATGATTTCTAAGAATCTAATTAATCATAAACCTTTGTCTCTCTT
ATCGTTTTAGATCGTGGAAAGAATTGAAGCTGTGTTTCTTTGTACCTTTA
ATGTTGTTGCTGTAGTTATCCATTTATATTAGAACGAGTGGAAGGATTTT
TTGTCTAACAAACAAAAAAAAAAAAAGAACCCCTCCTTCCTTGTACAACG
TTGGCACTCAAAAAATTGATGGTCTATCCTTTAGTTGCTCCCAACCGCCA
CACACCTCCAAAATAGCTCCTTTTTTCCCCCCCACCCCCACTCCCCCACC
TCACCCTCACACCCCCCCCCCCACCCTCTCCTGGAGAACCTGGCCCGCTT
CTCTTTTTATTTCCGGTCATCTGTCCTTCTCCTCATCTACTCCCTAATAT
TCATCATTTCAATACCCCACACCTACACTATATTTGATTTTAGATCCTAG
AATTATCGGGCTCATCTCGTGAAGGCAGCTTCCAACACCCCGCTCGCCAT
CCACTCTCCTACTACCTTCTATTTTTTCCCTGTTCGCACCCAATGTACTC
AACCCATATCACTTTTAAGATGCGAGAACCCACATAATCCTTTCCCCACT
TTAGCGATCGTACCGTCCCTTGCTCTTTCACTCGAATCTTATGAGACCCA
CCTAACTAATTGTTTCCCACCCTAACTACATACTCCACTGAACTTCCATC
ATGT
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