DY259845

Overview
NameDY259845
Unique NameDY259845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1069
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1329 contig Ccv1_Contig1329:1..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259845 vs. ExPASy Swiss-Prot
Match: IPO7_DICDI (Probable importin-7 homolog OS=Dictyostelium discoideum GN=DDB_G0269860 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.697e-50
Identity = 100/253 (39.53%), Postives = 161/253 (63.64%), Query Frame = 3
Query:    6 LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDE-TPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWKCM 761
            L  L+ +++FP++CFND D +LW+ DP+E++R  ++      + R   ++F+ ++V KRG+ NL   + F +    +Y+  T    K  R+KDG L+ I  L   LK    YKS LE+ML+ HVFPE SSP G L+A+A  +  ++ +I F+D   F  AL  ++  + D +LPVRV +  ++ + V A + ++E+RPILPQLLD+ F L++E E+EDLV  +E+I+ +F  E+APYA+ LC+NL+  F + +
Sbjct:  349 LSTLIQQVLFPIICFNDRDAELWECDPNEFLRSQFESSMTFATARIEVLNFIIDVVGKRGRANLDMIMGFCIQSLNKYNAATNASEKNPREKDGVLVIISVLSAYLKNISFYKSNLEQMLLLHVFPELSSPHGFLKARACSLFSEFYNIEFTDPVYFSNALKLILGLMSDNDLPVRVKAGTSICNLVRANQGVDELRPILPQLLDKIFSLLSEAESEDLVIAIESIIQRFKHEIAPYAVNLCKNLSEQFLRLL 601          
BLAST of DY259845 vs. ExPASy Swiss-Prot
Match: IPO7_MOUSE (Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 2.187e-39
Identity = 89/253 (35.18%), Postives = 143/253 (56.52%), Query Frame = 3
Query:   15 LLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWKCMNT 767
            ++ +++FPLMC+ D D++LW EDP+EY+R  +D+ ED  SP TA+   +     KR KE LQK + F   I    +  P      R+KDGAL  IG+L + L + + YK ++E ML  HVFP FSS +G++RA+A WV   +  + F    N + AL      L  D E+PV+V++  AL+  +       E I P +  ++     ++ E EN+DL   ++ ++ ++ EE+ P A+ + Q+LA  F + + T
Sbjct:  349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLFTACSKR-KEVLQKTMGFCYQILTEPNADP------RKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALLHIIRETENDDLTNVIQKMICEYSEEVTPIAVEMTQHLAMTFNQVIQT 594          
BLAST of DY259845 vs. ExPASy Swiss-Prot
Match: IPO7_HUMAN (Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.187e-39
Identity = 89/253 (35.18%), Postives = 143/253 (56.52%), Query Frame = 3
Query:   15 LLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWKCMNT 767
            ++ +++FPLMC+ D D++LW EDP+EY+R  +D+ ED  SP TA+   +     KR KE LQK + F   I    +  P      R+KDGAL  IG+L + L + + YK ++E ML  HVFP FSS +G++RA+A WV   +  + F    N + AL      L  D E+PV+V++  AL+  +       E I P +  ++     ++ E EN+DL   ++ ++ ++ EE+ P A+ + Q+LA  F + + T
Sbjct:  349 IIQDVIFPLMCYTDADEELWQEDPYEYIRMKFDVFEDFISPTTAAQTLLFTACSKR-KEVLQKTMGFCYQILTEPNADP------RKKDGALHMIGSLAEILLKKKIYKDQMEYMLQNHVFPLFSSELGYMRARACWVLHYFCEVKFKSDQNLQTALELTRRCLIDDREMPVKVEAAIALQVLISNQEKAKEYITPFIRPVMQALLHIIRETENDDLTNVIQKMICEYSEEVTPIAVEMTQHLAMTFNQVIQT 594          
BLAST of DY259845 vs. ExPASy Swiss-Prot
Match: IPO8_HUMAN (Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.956e-36
Identity = 83/250 (33.20%), Postives = 143/250 (57.20%), Query Frame = 3
Query:   24 EIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWKCMNT 767
            +++F +MC+ D D++LW EDP+EY+R  +DI ED  SP TA+   +    +KR KE L K + F   I      T   + P R+KDGAL  IG+L + L +   +K ++E  L  HVFP   S +G+LRA++ WV   ++ + F ++ N R A+      L  D E+PV+V++  AL+S +       E ++P +  ++ E   ++ E EN+D+   ++ ++ ++ +E+A  A+ + Q+LA  F K + +
Sbjct:  353 DVIFSVMCYKDEDEELWQEDPYEYIRMKFDIFEDYASPTTAAQTLLYTAAKKR-KEVLPKMMAFCYQIL-----TDPNFDP-RKKDGALHVIGSLAEILLKKSLFKDQMELFLQNHVFPLLLSNLGYLRARSCWVLHAFSSLKFHNELNLRNAVELAKKSLIEDKEMPVKVEAALALQSLISNQIQAKEYMKPHVRPIMQELLHIVRETENDDVTNVIQKMICEYSQEVASIAVDMTQHLAEIFGKVLQS 595          
BLAST of DY259845 vs. ExPASy Swiss-Prot
Match: IPO8_MOUSE (Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 5.042e-36
Identity = 89/289 (30.80%), Postives = 153/289 (52.94%), Query Frame = 3
Query:   24 EIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGL-RDPELPVRVDSVFALRSFVEACRDLNE-IRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWKCMNTXXXXXXXXXXXXXXXVGGLRAITPILESVNGPPPLFAQI 884
            +++F +MC+ D D++LW EDP+EY+R  +DI ED  SP TA+   +    +K+ KE L K + F   I      T   + P R+KDGAL  IG+L + L +   +K ++E  L  HVFP   S +G+LRA++ WV   ++ + F ++ N R A+      L  D E+PV+V++  AL+S +       E ++P +  ++ E   ++ E EN+D+   ++ ++ ++ +++A  A+   Q+LA  F K + +               +G L  I  IL  V   P +  Q+
Sbjct:  353 DVIFSVMCYKDEDEELWQEDPYEYIRMKFDIFEDYASPTTAAQTLLYTAAKKK-KEVLPKMMAFCYQIL-----TDPNFDP-RKKDGALHVIGSLAEILLKKSLFKDQIELFLQNHVFPLLMSNLGYLRARSCWVLHAFSSLKFHNELNLRNAVELAKKSLIEDEEMPVKVEAALALQSLISNQAQAKEHMKPYVRFIMQELLHIVRETENDDVTNVIQKLICEYSQDVASIAVDTTQHLAEIFGKVLQS--DEYEEIEDKTVMAMGILHTIDTILTVVEDHPEIIQQL 632          
BLAST of DY259845 vs. ExPASy Swiss-Prot
Match: IMA3_SCHPO (Probable importin c550.11 OS=Schizosaccharomyces pombe GN=SPCC550.11 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.574e-35
Identity = 81/253 (32.02%), Postives = 137/253 (54.15%), Query Frame = 3
Query:    6 LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDK-LKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDPELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWKCM 761
            L +L+   VFP +C ++ D++LW+ DP E++ K  DI +D  S   A+  F+ +L  KR K      + F   I  +Y  +P   K  RQK+GAL  + A+ +  L +  P    ++  LV HV PEF+SPVG+LR++A  +  +++ I++SD++    A  +V++ L+D +LPVR+ +  AL+  +      + +   +P ++     L NEV+ + L   +E  V  F  E+ P+A  L + L   F K M
Sbjct:  347 LQLLIGSFVFPQLCMSEEDEELWELDPVEFIHKYIDIYDDFNSADVAASRFLVKLASKRKKYTFMGILSFASDILNQYAASPPNEKNPRQKEGALRMVAAVSNSILSKNSPVAGMMQDFLVAHVMPEFTSPVGYLRSRACEMINRFSEIDWSDKSQLLNAYQAVLNCLQDNDLPVRIQAALALQPLMRHLEVHDVMTAHVPIIMQNLLFLANEVDIDALSSCMEEFVSSFSHELTPFASQLAKQLRNTFVKLM 599          
BLAST of DY259845 vs. ExPASy Swiss-Prot
Match: NMD5_YEAST (Nonsense-mediated mRNA decay protein 5 OS=Saccharomyces cerevisiae GN=NMD5 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.288e-19
Identity = 60/254 (23.62%), Postives = 123/254 (48.43%), Query Frame = 3
Query:    9 DVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRY--DETPVEYKPYRQKDGALLAIGALCDKL-KQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFSDQNNFRKALHSVVSGLRDP--ELPVRVDSVFALRSFVEACRDLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAFWK 755
            +V+L  ++FPL+       + +D DP EY+ +  D  +  YSP  A++  ++  V KRGK  LQ  ++F+V   +    D   +      Q +  L    ++ D+L  +  P+ SE+E+ ++ +V P F S  G L+++   +  +   ++F D          V++ L +    LPV + +  AL++F+   +   ++   +   + +   L N+ E++ +   ++  V++F E++ P+ + L   L   F K
Sbjct:  362 NVILQHVIFPLLKPTAETLEAFDNDPQEYINRNMDFWDVGYSPDLAALALLTTCVTKRGKTTLQPTLEFMVSTLQSAVGDYNNIMLDNALQIESCLRIFSSIIDRLITKDSPFASEMEKFILTYVLPFFKSQYGFLQSRVCDICSKLGSMDFKDPVITSTIYEGVMNCLNNSSNSLPVELTAALALQTFISDDQFNMKLSEHVVPTMQKLLSLSNDFESDVISGVMQDFVEQFAEQLQPFGVELMNTLVQQFLK 615          
BLAST of DY259845 vs. ExPASy Swiss-Prot
Match: SXM1_YEAST (Importin beta SMX1 OS=Saccharomyces cerevisiae GN=SXM1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.886e-16
Identity = 61/251 (24.30%), Postives = 119/251 (47.41%), Query Frame = 3
Query:    6 LDVLLFEIVFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFKRYDETPVEYKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFS-SPVGHLRAKAAWVAGQYAHINFSDQNNFRKALH-SVVSGLRDPELPVRVDSVFALRSFVEACRDLN-EIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCQNLAAAF 749
            L ++   ++FP +C N+   +L ++D  EY R+ +DI  +  +P  AS DF+  L+  +  E L   + FI  IF R+D    +     +++GAL  +  L   + +     S LE +    + P  S      L A++      Y+   F D N   +    +  + L    LPV++++  A++  + +   ++  +   +P ++++  KL    E + L   +E +V++F +E++P+A  L  NL   F
Sbjct:  340 LQIIFENVIFPCLCANEQSIELLEDDQEEYTRRYFDINREGSTPDAASADFIF-LIGSKRPEKLNNILPFINDIFTRFDANSSDINMAFKEEGALRTLSNLFSFIDE----PSVLENIFGHFIVPLLSQDKYMFLVARSLETIALYSE-EFKDMNILSQLFELTYTNFLNSNVLPVQIEAADAIKCLIVSNPQIHPAVSAHVPGMMEKLLKLSKIFEIDILSEVMEALVERFSDELSPFAKDLASNLVEQF 584          
The following BLAST results are available for this feature:
BLAST of DY259845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
IPO7_DICDI4.697e-5039.53Probable importin-7 homolog OS=Dictyostelium disco... [more]
IPO7_MOUSE2.187e-3935.18Importin-7 OS=Mus musculus GN=Ipo7 PE=1 SV=2[more]
IPO7_HUMAN2.187e-3935.18Importin-7 OS=Homo sapiens GN=IPO7 PE=1 SV=1[more]
IPO8_HUMAN2.956e-3633.20Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2[more]
IPO8_MOUSE5.042e-3630.80Importin-8 OS=Mus musculus GN=Ipo8 PE=2 SV=2[more]
IMA3_SCHPO5.574e-3532.02Probable importin c550.11 OS=Schizosaccharomyces p... [more]
NMD5_YEAST4.288e-1923.62Nonsense-mediated mRNA decay protein 5 OS=Saccharo... [more]
SXM1_YEAST9.886e-1624.30Importin beta SMX1 OS=Saccharomyces cerevisiae GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YG04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259845 ID=DY259845; Name=DY259845; organism=Citrus clementina; type=EST; length=1069bp
CACGGCTTGATGTCCTTCTCTTTGAAATAGTTTTCCCTCTTATGTGCTTC
AATGACAATGACCAAAAGCTTTGGGATGAAGACCCGCATGAGTACGTGAG
AAAGGGCTATGATATCATTGAAGATTTATATAGTCCCCGAACCGCTTCCA
TGGATTTTGTCAGTGAGCTGGTCAGAAAACGTGGGAAAGAGAACCTTCAA
AAGTTCATTCAATTCATTGTTGGAATTTTTAAGAGATATGATGAAACACC
GGTGGAATATAAACCATACCGACAGAAAGATGGCGCATTGCTTGCTATTG
GAGCTCTTTGTGATAAATTGAAACAAACTGAACCCTACAAATCTGAACTG
GAGCGCATGTTAGTGCAACATGTCTTCCCTGAGTTTAGCAGTCCTGTTGG
TCATCTTAGAGCCAAGGCGGCATGGGTTGCAGGACAGTATGCCCATATCA
ACTTCTCAGATCAGAACAATTTTCGTAAAGCGCTGCACAGTGTGGTTTCT
GGGTTGCGGGATCCAGAACTTCCTGTTCGTGTTGATTCTGTGTTTGCATT
ACGATCATTTGTTGAAGCTTGCAGAGATTTGAATGAGATTCGTCCAATCC
TCCCTCAACTACTTGATGAATTTTTCAAACTTATGAATGAGGTTGAGAAT
GAGGACCTTGTCTTCACTTTAGAGACCATAGTGGACAAATTTGGGGAGGA
AATGGCGCCTTATGCTCTTGGTTTATGCCAAAATTTGGCAGCTGCATTTT
GGAAGTGTATGAACACCGCTGAAGCCGATGAGGAGGCTGATGATCCTGGT
GCCTGGGCGGCCGTTGGTGGTTTGCGTGCCATAACCCCAATTCTTGAATC
CGTTAACGGGCCTCCCCCCCTTTTTGCCCAAATTGGCCCCACCCTGCCTT
CCAATATGGCCCAAAAAGGTTAACACCCAAGGGCCCAAAGGTTTTTAAAA
AAATTTTTAAAAAAATTGGGGCCAAAAAGGCCCTTTTTCCCCCCCAAAAA
ATCCCTTAAAAGATGTGGGAGTCTTTGTGCCCTTTCATGAGTGGAACCCT
TTTGCACAAATTGGGCCTC
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