DY259853

Overview
NameDY259853
Unique NameDY259853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1006
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259853 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 4.349e-42
Identity = 84/161 (52.17%), Postives = 117/161 (72.67%), Query Frame = 2
Query:    8 KNPLRDCMGNARALREGLEKTGRFEILS*DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGPRAGAC 481
            KN +++C+ NA+ L EG+ K GRF+I+S DVGVP+VAFSL+DSS +TVFE+SE LR+FGWIVPAYTMP +AE++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++      +G C
Sbjct:  342 KNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502          
BLAST of DY259853 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.653e-41
Identity = 87/151 (57.62%), Postives = 111/151 (73.51%), Query Frame = 2
Query:    8 KNPLRDCMGNARALREGLEKTGRFEILS*DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVK 460
            KN + +C  NA  LREGLEKTGRF I+S ++GVPLVAFSLKD+  H  FEISE LR+FGWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+
Sbjct:  341 KNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVE 490          
BLAST of DY259853 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.917e-38
Identity = 84/153 (54.90%), Postives = 111/153 (72.55%), Query Frame = 2
Query:    8 KNPLRDCMGNARALREGLEKTGRFEILS*DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRETQEEVTRHWKRFV 457
            +N + +C  N   LREGLEKT RF I+S D GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+V++E++ LPSRV  K + +    +E+  D     +KKS  + Q ++   WK+FV
Sbjct:  341 RNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFV 492          
BLAST of DY259853 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.225e-37
Identity = 82/151 (54.30%), Postives = 110/151 (72.85%), Query Frame = 2
Query:    8 KNPLRDCMGNARALREGLEKTGRFEILS*DVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVK 460
            KN + +C+ N   L+EG+EKT RF I+S D GVP+VAFSLKD S H  FEISE LR+FGWIVPAYTMPA+A+++ VLRVV+REDFSR+L ERL++ I +VL E+++LPS++S K    I  + E   +K ++K   E   EV   W++FVK
Sbjct:  340 KNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMG--IEGIAENVKEKKMEK---EILMEVIVGWRKFVK 485          
The following BLAST results are available for this feature:
BLAST of DY259853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DCE_SOLLC4.349e-4252.17Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY1.653e-4157.62Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH2.917e-3854.90Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH3.225e-3754.30Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YG15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259853 ID=DY259853; Name=DY259853; organism=Citrus clementina; type=EST; length=1006bp
AAGGGACAAGAACCCCTTGAGAGATTGCATGGGGAATGCNAGAGCGCTAA
GAGAAGGATTAGAGAAAACAGGGCGCTTTGAAATTCTCTCCTAGGATGTT
GGCGTACCCTTAGTAGCCTTTTCTTTGAAGGACAGCAGCGCACACACCGT
GTTTGAGATATCCGAGGGTTTGAGAAAGTTTGGGTGGATAGTTCCGGCCT
ATACAATGCCTGCTAATGCTGAAAATGTGGCGGTTCTTCGGGTGGTTGTC
AGGGAGGATTTCAGCCGTAGCTTGGTGGAAAGACTCATCTCACACATCGA
GGAAGTTTTGAAGGAAATTGAATCGCTTCCAAGTCGTGTATCCACGAAAA
CTGCCCATGTCATACCCATGGTCAACGAAACTCAGGGTGATAAGCCACTT
AAGAAGAGTGTGAGGGAGACTCAGGAAGAAGTCACCAGGCACTGGAAGAG
GTTCGTGAAAGGGCCGAGAGCTGGTGCATGCTGAGGTTCCAAACATAAAA
CTAGACAGAATTTGTATGCTTGATTGAATTTCAAAGCTAGTGCTTCATCG
CGGTTTACGTCAAATTTCACTACCAAAAGAGCACAGTCTCATTATTAACA
GAAGCCCAGAAAAATAATCCTAAATGGCTTACTAACCAGTATTTTTGGCT
CTCCGAGACTTTGCCTTCTAACACTAGTTCTACGTAAGCTCTCACATGTC
CCCTACCTCTCCGTGCTATTCATCCATCTCCCTCGCTATTATAAACTTAT
TTCATACCATAATCCGCTCAAAATGAAAACCAAAGACAACACAAAATAAA
GACACACATACAACCGCCCCCCCTCTACGCAGCCCCCTCCCCCCCCCAAT
CATTCTTGTCAACGTTTGAACTCACGGTCACAGATGAGAACAAACATGCA
CTCGATGGCGGAAGCATAGCACGATAAGCTACCAGACGTCTTGATGTTTG
TCTATACTTACTCGCATCGATTCTCCAAAGACACTCCTCAATGGAGGCTG
AGTCCC
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