DY259858

Overview
NameDY259858
Unique NameDY259858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1127
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.674e-61
Identity = 120/185 (64.86%), Postives = 135/185 (72.97%), Query Frame = 1
Query:  205 VLASDSLLSPKGVNYEVAALMALKIKMRDDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIPTLVAXXXXXXXXXXXXXXXXGPYPKVLTNG*SFTGKSFLC 759
            V A DSLLSPKGVNYEVAALM++K KM+D+  V+ GWDINSVDPCTWNMV CS+EGFVVSLEMAS GLSG LS SIG LTHL T+LL NNQL+GPIP E G LSEL+TLDLS N+  GEIP+SLGFLTHL YLRL+ N LSGQ+P LVA                GP P +        G +FLC
Sbjct:   24 VSAMDSLLSPKGVNYEVAALMSVKNKMKDEKEVLSGWDINSVDPCTWNMVGCSSEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTPNISAKDYRIVGNAFLC 208          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.336e-34
Identity = 80/178 (44.94%), Postives = 103/178 (57.87%), Query Frame = 1
Query:  226 LSPKGVNYEVAALMALKIKMRDDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIPTLVAXXXXXXXXXXXXXXXXGPYPKVLTNG*SFTGKSFLC 759
            LS +  N EV AL+ +K ++ D   V   WD  SVDPC+W M++CS++  V+ L   S  LSGTLS SIGNLT+LR + L NN +SG IP E   L +LQTLDLSNN+  GEIP S+  L++L YLRLNNN LSG  P  ++                GP PK      +  G   +C
Sbjct:   26 LSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRGPVPKFPARTFNVAGNPLIC 203          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.339e-26
Identity = 59/127 (46.46%), Postives = 84/127 (66.14%), Query Frame = 1
Query:  259 ALMALKIKMRDDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            AL AL+I +R   + +  W+ N V+PCTW+ V C  + FV SL ++ M  SGTLS  +G L +L+T+ L  N ++G IP +FG L+ L +LDL +NQL G IPS++G L  L +L L+ NKL+G IP
Sbjct:   33 ALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKLNGTIP 159          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 5.625e-25
Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = 1
Query:  205 VLASDSLLSPKGVNYEVAALMALKIKMRDDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            +L  D +L   G N E  AL ALK  + D   V+  WD   V PCTW  V C+++  V  +++ +  LSG L   +G L +L+ + L++N ++G IP + G L+EL +LDL  N L G IPS+LG L  L +LRLNNN LSG+IP
Sbjct:   14 ILVLDLVLRVSG-NAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIP 157          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.792e-24
Identity = 56/132 (42.42%), Postives = 82/132 (62.12%), Query Frame = 1
Query:  244 NYEVAALMALKIKMRDDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            N E  AL +L+  + D  +V+  WD   V+PCTW  V C+ E  V+ +++ +  LSG L P +G L +L+ + L++N ++GP+P + G L+ L +LDL  N   G IP SLG L  L +LRLNNN L+G IP
Sbjct:   30 NMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIP 161          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 4.762e-24
Identity = 57/132 (43.18%), Postives = 82/132 (62.12%), Query Frame = 1
Query:  244 NYEVAALMALKIKMRDDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            N E  AL  L++ + D  +V+  WD   V+PCTW  V C+ E  V+ +++ +  LSG L P +G L +L+ + L++N ++GPIP   G L+ L +LDL  N   G IP SLG L+ L +LRLNNN L+G IP
Sbjct:   27 NLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIP 158          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.173e-22
Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = 1
Query:  250 EVAALMALKIKMRDDLH---VMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            +V AL+AL+  +    H   ++  W+   V PC+W  V C+ E  V  L++ S  LSG L P +  L +L+ + L NN ++G IP E G L EL +LDL  N + G IPSSLG L  L +LRL NN LSG+IP
Sbjct:   27 QVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLSGEIP 159          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.173e-22
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 1
Query:  298 HVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            +V+  WD   V PCTW  V C+ E  V  +++ +  LSG L P +G L +L+ + L++N ++G IP E G L EL +LDL  N + G IPSSLG L  L +LRLNNN LSG+IP
Sbjct:   51 NVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIP 164          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.098e-20
Identity = 52/145 (35.86%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  220 SLLSPKGVNYEVAALMALKIKMR-DDLHVMDGWDINSVDPCTWNMVACSAEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIPTLVA 651
            S+LS   +N +   LM  K  +  D L ++  W+     PC+W  ++C+ +  V++L + +  L G++   +G+L  L+++ L NN  +GP+PV F    EL+ LDLS+N + GEIPS++G L +L  L L++N L+G++PT +A
Sbjct:   15 SVLSSSALNSDGLVLMKFKSSVLVDPLSLLQTWNYKHESPCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNLLTLNLSDNALAGKLPTNLA 159          
BLAST of DY259858 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.446e-20
Identity = 50/132 (37.88%), Postives = 81/132 (61.36%), Query Frame = 1
Query:  250 EVAALMALKIKMRDD-LHVMDGWDINSVDPCTWNMVACS-AEGFVVSLEMASMGLSGTLSPSIGNLTHLRTMLLHNNQLSGPIPVEFGMLSELQTLDLSNNQLVGEIPSSLGFLTHLTYLRLNNNKLSGQIP 639
            EV AL   K  + +D L VM  W+  + DPC W  + CS ++  V+ + +++  + G L+P +G +T+L+ ++LH N L G IP E G L  L+ LDL NN L+G IP+ +G L+ +  + L +N L+G++P
Sbjct:   27 EVQALRRFKEAIYEDPLLVMSNWNDPNSDPCDWTGIYCSPSKDHVIKINISASSIKGFLAPELGQITYLQELILHGNILIGTIPKEIGNLKNLKILDLGNNHLMGPIPAEIGSLSGIMIINLQSNGLTGKLP 158          
The following BLAST results are available for this feature:
BLAST of DY259858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
Y5457_ARATH1.674e-6164.86Probable LRR receptor-like serine/threonine-protei... [more]
Y2239_ARATH1.336e-3444.94Probable LRR receptor-like serine/threonine-protei... [more]
Y5129_ARATH1.339e-2646.46Probable LRR receptor-like serine/threonine-protei... [more]
BAK1_ARATH5.625e-2543.45BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK2_ARATH2.792e-2442.42Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK1_ARATH4.762e-2443.18Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK5_ARATH1.173e-2243.61Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH1.173e-2247.37Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y4372_ARATH1.098e-2035.86Probable LRR receptor-like serine/threonine-protei... [more]
Y1634_ARATH2.446e-2037.88Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YG20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259858 ID=DY259858; Name=DY259858; organism=Citrus clementina; type=EST; length=1127bp
CAGATTGCGACTTCTATATTCAATTTTCTGCACTGTCTCTCACTAAAAAA
AAGAAAAAAAGCAACCACATCCTTTTGCTTTACTGTTTGTTCACTTTCGG
GTTTCCAGTCCAAGTCAATGGGAAATAATCGAATGGCGGTGTCTTTTTTG
TTGTTGCTTTTAATTTTAATTTTCGCTTTGTTTTGGGAAGACACCAAAGT
GAAAGTATTAGCCTCTGACAGTCTCCTATCTCCCAAGGGCGTTAATTATG
AAGTTGCTGCTTTGATGGCTCTGAAGATCAAAATGAGAGATGATTTGCAT
GTGATGGACGGCTGGGATATTAACTCTGTGGATCCTTGTACTTGGAATAT
GGTCGCTTGCTCTGCTGAAGGTTTCGTTGTTTCTCTTGAAATGGCAAGCA
TGGGCTTATCAGGAACGCTGTCCCCAAGTATTGGGAACTTGACCCACCTA
AGAACAATGTTATTGCATAACAATCAGTTATCTGGTCCTATCCCAGTTGA
ATTTGGGATGCTCTCAGAGCTTCAAACTCTTGACCTTTCTAATAATCAAC
TTGTTGGAGAAATTCCAAGTTCTTTGGGTTTCCTGACTCATCTAACTTAC
TTGAGGCTTAATAACAACAAGTTATCTGGACAGATTCCTACTCTTGTTGC
CAATCTTACAAGTCTTTCATTCTTGGATTTATCATTCAATAATCTCAGTG
GGCCCTACCCTAAAGTACTAACCAACGGCTAAAGTTTTACAGGGAAAAGC
TTTCTTTGTACTACCTTGGAACATTCTGGCCCTGGTGTTTCAAAACCAAA
AAAAAAAAAGGTCTACCCCCAAAGCCCAGGTCCACCCCCATTGGGGGCTT
TCCCTTGCGGTTGGCACCCTTCCACATTTTTTTGTTCAAGGGGTTTCCTT
GTTTGTTGGGGGCTTGGGAAAAAATCCCCCCTTCTTTTACATCCAATTTT
ACACAAAAAAAAAAAAATTTATGTTTGCCACCCCAAAAAAAGTTTTCTTT
TTCGAGATATCAAATCTCCCCCTGAAAAATTTATTTCCCCAAAAAACCTT
TCCCGGCGGGGGGGAAAAAACCGGAAAATAAATATAAAAAGGGTGCTCCC
CCAAAAAAACAAGAGCGGGGGGCGAAA
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