DY259886

Overview
NameDY259886
Unique NameDY259886
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length969
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259886_ssr5 microsatellite DY259886_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6315 contig Ccv1_Contig6315:343..1310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259886 vs. ExPASy Swiss-Prot
Match: GBF4_ARATH (G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.059e-18
Identity = 51/88 (57.95%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   70 MDKATQQKQRRMIKNRESAARSRERKQAYTVELESLVTQXXXXXXXXXXXXXXQNKQRFKQLMENLIPVVEKRRPP-RVLRRVNSLHW 330
            MDKA  Q+Q+RMIKNRESAARSRERKQAY VELE+L  +                K+R+K+LME LIPV EK RPP R L R +SL W
Sbjct:  183 MDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEVLIPVDEKPRPPSRPLSRSHSLEW 270
The following BLAST results are available for this feature:
BLAST of DY259886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GBF4_ARATH7.059e-1857.95G-box-binding factor 4 OS=Arabidopsis thaliana GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YI05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259886 ID=DY259886; Name=DY259886; organism=Citrus clementina; type=EST; length=969bp
CAGTTGGTGGTGGTGGGGCCAGGGGGAGGGGGAGGGAGAGGGAAGAGGCG
AATTGTTGAAGAGCCACCCATGGATAAGGCAACTCAGCAAAAGCAGAGGA
GAATGATCAAGAACCGAGAGTCTGCTGCAAGGTCCAGAGAGCGAAAGCAG
GCGTACACAGTTGAATTGGAGTCGCTGGTGACGCAGCTGGAGGAGGAGAA
AGCACGGCTGCTGAGGGAAGAGGCTGAGCAGAACAAGCAGAGGTTTAAGC
AGCTCATGGAGAATCTTATTCCTGTTGTTGAGAAGAGAAGACCACCTCGT
GTTCTTCGAAGAGTGAACTCATTGCACTGGTAGATGAGGTGTGTTATCAA
CTGTCAATTGTTAGCTTAGACTAAAGAAATAGTCTGCCTTTGCAGCTTAC
GCAGCCTGCCATTGAGACTATCAGATAGAAGAATATGAAGATGGGGGGAA
ATGCTCGGGATTAATTCCCCTTTGGTAGCTGATGCAGACAGAGACTTTAA
ATAATTTAATCAAAATTGAAGATGGATGTTTAAATCACTGCTTAATGAGA
TCCCTGACAAAATTTGTAGTGGATTATTTTAATTAGGGCACTGTAAAATT
TGTTTTCTTTTTCCTAATACCATTTTAGGAAAGCTTCGGGATCTCTTTAT
TTTGCTGCCGGAAGGAAACCCCAATTGCTCTGTGCCCGCCCGAACAAATT
AAATGTGGCGACCCCTACCTATTTAAACCGGCTCGGGGTTTGTAATCGCT
AATAACTCGACGAACTTGCTTTAAATATTTACAGGGGGTGGTTATTTCTT
ACCTCTTTTCATTGATTAGCAACCGTCTTTGCTTAAATAACATATACCCC
CAAACCCCTTCTTCCTGGCACGATTTCTCGCTCATCAACAACAACCTGGC
TCCACCATTTTGTCCTCTCCCAAATTCTCTCTGAAGTTGCTAGTACATCC
TTTTTGTGCCCCGCCCTCC
back to top