DY259961

Overview
NameDY259961
Unique NameDY259961
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length952
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259961 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.083e-13
Identity = 45/153 (29.41%), Postives = 70/153 (45.75%), Query Frame = 2 
Query:  257 VVSLPIGTPPQTQEMVLDTGSQLSWIKCHK--KAPAXXXXXXXXXXXXXXXVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDT-----SEDKGILGMNPGRLSFASQAKISKFSYCV 694
            ++++ IGTP  +   ++DTGS L W +C    +  +                LPC    C+       LP++   N  C Y+Y Y DG+  +G +  E FTF  + S   +  GC +D          G++GM  G LS  SQ  + +FSYC+
Sbjct:   97 LMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQD------LPSETCNNNECQYTYGYGDGSTTQGYMATETFTFETS-SVPNIAFGCGEDNQGFGQGNGAGLIGMGWGPLSLPSQLGVGQFSYCM 242
[Close]
BLAST of DY259961 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.670e-13
Identity = 46/153 (30.07%), Postives = 69/153 (45.10%), Query Frame = 2 
Query:  257 VVSLPIGTPPQTQEMVLDTGSQLSWIKCHKKAPA--XXXXXXXXXXXXXXXVLPCTHPLCKPRIVDFTLPTDCDQNRLCHYSYFYADGTFAEGNLVKEKFTFSAAQSTLPLILGCAKDT-----SEDKGILGMNPGRLSFASQAKISKFSYCV 694
            +++L IGTP Q    ++DTGS L W +C                        LPC+  LC+       L +    N  C Y+Y Y DG+  +G++  E  TF +  S   +  GC ++          G++GM  G LS  SQ  ++KFSYC+
Sbjct:   96 LMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQ------ALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSV-SIPNITFGCGENNQGFGQGNGAGLVGMGRGPLSLPSQLDVTKFSYCM 241
The following BLAST results are available for this feature:
BLAST of DY259961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR5.083e-1329.41Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR8.670e-1330.07Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YM13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259961 ID=DY259961; Name=DY259961; organism=Citrus clementina; type=EST; length=952bp
AAAAATGTTTCTCTGCAACAAAACCGTGCTTCTTTTGCTCTTGCTCCTCA
CAGTCCTCTCCCTCTCAGCCCAAGCAAGTTCGAATAACAACACCACTTTT
TCCGTTTCATTTGCCCTCATATCTCGCCGTTTCTCCCATGACGATTTGTC
TCCGTCATATTACTCCTCTTTCGTTTCGCAGACGAAACAAAACCGCAAAG
TAGCGAGAGCTCCGTCTCTACGCTATAGATCCAAGTTTAAATATTCAATG
GCTCTTGTGGTGTCTCTCCCCATAGGGACTCCACCTCAGACTCAGGAGAT
GGTCTTAGACACCGGCAGCCAGCTCTCCTGGATTAAGTGTCACAAGAAAG
CCCCTGCTCCTCCCACGACGTCCTTTGATCCTTCTCGTTCTTCTTCTTTC
TCTGTTCTCCCCTGTACTCACCCGCTTTGTAAGCCTCGGATCGTCGATTT
TACCCTCCCCACCGATTGCGACCAGAACCGTTTGTGCCATTACTCTTACT
TCTACGCAGATGGTACGTTCGCCGAGGGTAATCTCGTCAAAGAAAAATTC
ACCTTCTCTGCTGCCCAGAGCACCCTTCCTTTGATTCTCGGCTGCGCTAA
GGATACGAGCGAGGACAAGGGTATTCTGGGAATGAACCCTGGACGGTTGT
CCTTCGCTTCCCAAGCGAAAATATCCAAGTTCTCCTATTGTGTCCCCAAC
CGAGTGTCCCAAGTCGGGTACCCACCCACCCGGGTCGTTTTACCTTGGTG
AGAACCCCAACTCCACCCGGGTCCCCCTACTTCACCTTCTTGACCTTTCC
CTCAAGTCAACCCCCTCCAAATTTGGACCCCCGGGCGTAAAAGGTTCCCC
TCGCAGGGGGTTCAATTTCAAGGAAAAAAACGGGATATCCCGCCCCCGCC
TTCCCCCCGGAACCACCGGGGTCGGGCCCAACCACCCCCAAATCCGGAAC
CA
back to top