DY260006

Overview
NameDY260006
Unique NameDY260006
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1062
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260006 vs. ExPASy Swiss-Prot
Match: Y3028_ARATH (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.259e-28
Identity = 92/260 (35.38%), Postives = 130/260 (50.00%), Query Frame = 1
Query:   55 SSTTIISKCTVRP---DQKSRIKPLRLSVSDLPMLSCQYIQKGVLLTAPPFSITHFVSLLRQSLSVALSHFPALAGRFST-----DSDGHISILCNDTGVDFIHAKATFLSVNSLLSPI-DVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHALTDGTSFWHFFNTFAEITKGAKKISKVPDFSRDTVFDSPAVLKFPAGGPAVTFSRAVPLR-------ERIFHFSKEAILRIKFRANKGILKSDY 786
            +  T IS   VRP   +Q+ R K + L+  DL +L   Y Q+G+L   P    THF+S LR SLS AL  +   AGR +      D      I C+ +G  FIHA +  +SV+ LL P   VPD F+ F+  +   S  G   PL A+QVTE+ DGVF+G   NH + DG S W+FF T+++I    ++ +  P   +    D    + FP   P      + P R       ER+FHF+K  I  +K + N  I   D+
Sbjct:    2 ADVTFISSSIVRPQIINQEGREK-IHLTPFDLNLLYVDYTQRGLLFPKPDPE-THFISRLRTSLSSALDIYFPFAGRLNKVENHEDETVSFYINCDGSGAKFIHAVSDSVSVSDLLRPDGSVPDFFRIFYPMNGVKSIDGLSEPLLALQVTEMRDGVFIGFGYNHMVADGASIWNFFRTWSKICSNGQRENLQPLALKGLFVDG---MDFPIHIPVSDTETSPPSRELSPTFKERVFHFTKRNISDLKAKVNGEIGLRDH 256          
BLAST of DY260006 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.675e-23
Identity = 93/266 (34.96%), Postives = 130/266 (48.87%), Query Frame = 1
Query:   67 IISKCTVRPDQKSR-IKPLRLSVSDLPMLSCQYIQKGVL--------LTAPPFSITHFVSLLRQSLSVALSHFPALAGRFSTDSDG--HISILCNDT---GVDFIHAKATFLSVNSLLSPIDVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHALTDGTSFWHFFNTFAEITKGAKKISKVPDFSRDTVFDSPAVLKFPA---------GGPAVTFSRAVP-LRERIFHFSKEAILRIKFRANKGILKSDYYK 792
            I+SK  V+P +     K   L+  DLP L+  Y QK +L        L  P F     V  L+  L + L  F  LAG+ + D +G   +     D+   GV+F  A A  ++V+ L +  D    FKE   ++  ++  G  RPL AVQVT+L DG+ +G   NHA+ DGTS WHF +++AEI +GA+ IS  P   R    D+   L   A         G  A   +   P L E+IF FS  A+  IK RAN  ++ SD  K
Sbjct:    5 IMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQ-NEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAE-DGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICRGAQSISTQPFLDRSKARDTRVKLDLTAPKDPNETSNGEDAANPTVEPPQLVEKIFRFSDFAVHTIKSRAN-SVIPSDSSK 267          
The following BLAST results are available for this feature:
BLAST of DY260006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3028_ARATH2.259e-2835.38Uncharacterized acetyltransferase At3g50280 OS=Ara... [more]
DCR_ARATH1.675e-2334.96BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YO18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260006 ID=DY260006; Name=DY260006; organism=Citrus clementina; type=EST; length=1062bp
CATCATTCATAGATATTCGGTTGAAGGGAATAAAAGCAAGCAAACATGCC
TTCTTCTTCAACCACAATCATCTCCAAATGCACAGTGCGCCCCGATCAAA
AATCAAGAATCAAGCCTCTCAGACTCTCTGTTTCAGACCTCCCCATGCTC
TCTTGCCAGTACATTCAAAAAGGCGTCCTCCTCACGGCCCCTCCATTTTC
AATCACCCATTTCGTTTCATTGCTCAGGCAATCACTTTCGGTCGCTCTTT
CCCACTTCCCCGCCCTCGCCGGCCGCTTCTCCACCGACTCCGACGGCCAC
ATCAGCATCCTCTGCAACGATACGGGCGTCGACTTCATTCACGCCAAGGC
CACTTTCCTTTCCGTCAACAGCCTCCTCTCGCCCATCGACGTCCCCGATT
CTTTCAAGGAGTTCTTCGCTTTTGACAGAACCATCAGCTACACCGGCCAT
GTCAGGCCCTTAGCCGCCGTCCAAGTGACGGAGCTAGCTGACGGCGTCTT
CGTCGGTTGTACGGTCAATCACGCCCTCACTGACGGTACCTCCTTTTGGC
ACTTCTTTAATACATTCGCCGAAATCACTAAAGGCGCCAAGAAAATCTCG
AAAGTTCCCGACTTCTCCCGCGACACCGTTTTTGACTCGCCGGCGGTGCT
CAAGTTCCCCGCCGGTGGCCCCGCTGTTACTTTCTCCCGCGCGGTGCCGT
TGCGTGAGAGAATCTTCCATTTCAGCAAGGAGGCTATTTTGAGGATAAAG
TTCCGGGCTAATAAGGGAATTTTAAAAAGTGATTACTACAAGTCCGTAAA
TAAACAAAATAAAGGGCAACCAAATTAACCACCGTTGGAAAACGGGTAAC
CGGAGAAAAAACCGCCCCTTTTTCAAACCCCGTTAAAAACCCAACCCAAA
CTCCAACGCACGAAATTTTCTCTTTCCCTTCCCTGGTGCCCTCCGCCATG
GCGGACCCCCGGAACCGTGCGAAGAGAAACCCAATTCCGGGAAAAACAAA
CACCCTTTTCCCACGGGGCGTGAAATCGACCGCCCACAGGCCCCCAACCC
CCGGCCCCCCTC
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