DY260019

Overview
NameDY260019
Unique NameDY260019
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1088
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260019_ssr23 microsatellite DY260019_ssr23:23..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1393 contig Ccv1_Contig1393:1..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260019 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.485e-36
Identity = 54/123 (43.90%), Postives = 77/123 (62.60%), Query Frame = 2 
Query:   65 RKYLIQLPVHPLRTKAIPAGILAGCSDAIAQKISGVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYP 433
            ++YL QL  HPLRTKAI AG+L+G SD ++QK+SG++K         + +   + GP GHF H  +D  F            V+LEQLT SP N+ LFM+YYG+V+E   W+LV+ +++K YP
Sbjct:   12 QRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYP 134

HSP 2 Score: 58.5362 bits (140), Expect = 2.485e-36
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 3 
Query:  408 RIKFGRTIPSVQLTAWRFWPIVGWVNYQYIPLPFRVV 518
            R +  +T P+VQLTAW F+P+VGW+NY+Y+PL FRV+
Sbjct:  126 RERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVI 162
The following BLAST results are available for this feature:
BLAST of DY260019 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PMP22_ARATH2.485e-3643.90Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YP16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260019 ID=DY260019; Name=DY260019; organism=Citrus clementina; type=EST; length=1088bp
GGCTCTTCGCACGCTTACGGTCGCCAGCCAGCCAGCCATGTCTGATGTAG
CCCAAGAAGCTTGGAGAAAATATCTCATACAACTCCCAGTTCACCCTTTG
AGAACCAAGGCAATCCCCGCTGGTATATTAGCTGGGTGTAGTGATGCCAT
TGCCCAGAAGATTTCTGGGGTCAAAAAGCTTCAACTTACAAGATTGTTGC
TTCTTATGTTTTATGGTTTTGCATATGGAGGACCATTTGGGCATTTTCTT
CACAAATTGATGGATATTATTTTCAAGGGAAAGAAGGACAAGAAAACTGT
TGCGAAGAAGGTGTTGTTGGAGCAACTAACTTCTTCACCTTGGAACAATT
TCCTTTTCATGATGTACTATGGCTTGGTGGTTGAAGGAAGATCATGGAGT
TTAGTCAAGAATAAAGTTCGGAAGGACTATCCCTTCCGTTCAGTTGACTG
CATGGAGGTTTTGGCCCATAGTTGGCTGGGTGAACTACCAGTACATCCCT
CTGCCATTTCGAGTTGTGTTCTCATAGCTTTGTTGCCCCATGCTGGGCTA
TCCTCCCCCCATTTGAAAGCCAGATCCGCTCCCTTCCAAAAGGACTAGAC
GCACGAACCTTTCTACATCTGGCCCAATTTAATTTCCTAAAATTTTCACG
CCACACTTTCCTACCTCCAAAAACCCGCTTAAAATTCTCCCCCCCACTGC
CTAATTGGCTTGCTCTATCTTCTGCCATCCAGTAGCATTCCATACTCTCC
CCTGAACAAAAACACCCACACAACAACCAAACCCCCCCCCACCCTCGACC
CCACCCCGTATCAAACACCCCCCTCTCCCACTCACTACCTATCCCCCCCG
CAACACCCCCCCCCCCACACCACTTCCCACCTTACTCCCTCCCCTAGCAT
CCTCCACCCGCACCACCTTCCCCACTGCACCAAACCCCCCCCCCCCACAA
CCCCCCCCCGAGTTCCCCTCCCCCCCCCCCCCCCCCAACCCCCCCTCAAC
TCGCTTTCCCCCCATCCCCAAAAACCCCTTCCCCCTCTCCCCACCACCCT
TAACCCATCTCCCTCCCCCCACCCACCTCCCCCCCCCC
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