DY260025

Overview
NameDY260025
Unique NameDY260025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1031
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260025 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.624e-31
Identity = 74/186 (39.78%), Postives = 93/186 (50.00%), Query Frame = 1
Query:  142 LFCNKTSVISQSPEKTLNLPLTHVKFXXXXXXXXXXXXXXXXXRFRLQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQTILKRKRPAKLDIP------VASMSFGGLVTPXXXXXXXXXXXXXGFYSVYCKRGRREAMEDRFSALVDFQGDSKQAVFGIFDGHGGAQAAEFAAENLDKNI 681
            LFCNK+S++S SP+++L+L L+H K                   FRL+                                     +LKRKRP +LDIP      VA +S    V                 YSVYCKRGRREAMEDRFSA+ +  GD KQA+FG++DGHGG +AAEFAA+NLDKNI
Sbjct:   19 LFCNKSSILS-SPQESLSLTLSHRKPQTSSPSSPSTTVSSPKSPFRLRFQKPPSGFAPGPLSFGSESVSASSPPGG---------VLKRKRPTRLDIPIGVAGFVAPISSSAAVAATPREECREVEREGDGYSVYCKRGRREAMEDRFSAITNLHGDRKQAIFGVYDGHGGVKAAEFAAKNLDKNI 194          

HSP 2 Score: 40.0466 bits (92), Expect = 2.624e-31
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 2
Query:  674 RTFLEEVLRRDIENQIGDAVKPGYLNTDFEFLKKNVLRGFRLW*QLWKQNEPLGVPNAADC 856
            +  +EEV+ +  E++I +AVK GYL TD  FLK+  ++G             L V NA DC
Sbjct:  192 KNIVEEVVGKRDESEIAEAVKHGYLATDASFLKEEDVKGGSCCVTALVNEGNLVVSNAGDC 252          
BLAST of DY260025 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.382e-28
Identity = 57/102 (55.88%), Postives = 67/102 (65.69%), Query Frame = 1
Query:  394 TILKRKRPAKLDIPVASMSFGGLV----TPXXXXXXXXXXXXXGFYSVYCKRGRREAMEDRFSALVDFQGDSKQAVFGIFDGHGGAQAAEFAAENLDKNIFG 687
            +ILKRKRP  LDIPVA +     +    TP               YSVYCKRG+REAMEDRFSA+ + QGD KQA+FG++DGHGG  AAEFAA+NL  NI G
Sbjct:   80 SILKRKRPTTLDIPVAPVGIAAPISNADTPREESRAVEREGDG--YSVYCKRGKREAMEDRFSAITNLQGDPKQAIFGVYDGHGGPTAAEFAAKNLCSNILG 179          

HSP 2 Score: 36.5798 bits (83), Expect = 9.382e-28
Identity = 23/58 (39.66%), Postives = 32/58 (55.17%), Query Frame = 2
Query:  683 LEEVLRRDIENQIGDAVKPGYLNTDFEFLKKNVLRGFRLW*QLWKQNEPLGVPNAADC 856
            L E++    E++I +AVK GYL TD EFLK+  ++G          +  L V NA DC
Sbjct:  178 LGEIVGGRNESKIEEAVKRGYLATDSEFLKEKNVKGGSCCVTALISDGNLVVANAGDC 235          
BLAST of DY260025 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.488e-17
Identity = 71/183 (38.80%), Postives = 87/183 (47.54%), Query Frame = 1
Query:  391 QTILKRKRPAKLDIPVASMSFGGLVTPXXXXXXXXXXXXX---GFYSVYCKRGRREAMEDRFSALVDFQGDS--KQAVFGIFDGHGGAQAAEFAAENLDKNIFG--GSPEKGY*KPNWGCR*TWLFKHGF*VS----*KKCSTGVPAVVTALETKRTSGGPQCGGLPRLL*PKGALAEAPTSN 906
            +T+LKRKRP  LD+  A        T                 G+YSVYCKRGRR  MEDR+ A VD   D   K A FG+FDGHGG++AAEFAA NL  NI     S   G      GC      + G+  +     K+ S G    VTAL +K        G   R +  +G  AEA TS+
Sbjct:   84 ETVLKRKRPPMLDLTAAPTVASWCSTTRETAEKGAEVVEAEEDGYYSVYCKRGRRGPMEDRYFAAVDRNDDGGYKNAFFGVFDGHGGSKAAEFAAMNLGNNIEAAMASARSG----EDGCSMESAIREGYIKTDEDFLKEGSRGGACCVTALISKGELAVSNAGDC-RAVMSRGGTAEALTSD 261          
BLAST of DY260025 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.273e-14
Identity = 44/101 (43.56%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  394 TILKRKRPAKLDIPV----ASMSFGGLVTPXXXXXXXXXXXXXGFYSVYCKRG---RREAMEDRFSALVDFQGDSKQAVFGIFDGHGGAQAAEFAAENLDK 675
            ++LKR+RPA L +PV    A+ +    V                 ++VYC+RG   RR  MEDR  A V   GD K A FG+FDGHGG  AAEF AEN+ K
Sbjct:   85 SVLKRRRPAPLVVPVCGGAAAAAAAAAVAAVESDPRNEVEEDGEEFAVYCRRGKGRRRVEMEDRHVAKVALGGDPKVAFFGVFDGHGGKSAAEFVAENMPK 185          

HSP 2 Score: 25.7942 bits (55), Expect = 1.273e-14
Identity = 20/43 (46.51%), Postives = 21/43 (48.84%), Query Frame = 2
Query:  728 AVKPGYLNTDFEFLKKNVLRGFRLW*QLWKQNEPLGVPNAADC 856
            AVK  YL TD EFLK+    G      L  Q   L V NA DC
Sbjct:  205 AVKRCYLKTDEEFLKREESGGACCVTAL-LQKGGLVVSNAGDC 246          
BLAST of DY260025 vs. ExPASy Swiss-Prot
Match: P2C53_ARATH (Putative protein phosphatase 2C 53 OS=Arabidopsis thaliana GN=At4g08260 PE=5 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.329e-11
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  553 MEDRFSALVDFQGDSKQAVFGIFDGHGGAQAAEFAAENLDKNI 681
            MEDRFSA+ +  GD KQA+FG++ GHGG +AAEFAA+NLDKNI
Sbjct:    1 MEDRFSAITNLHGDHKQAIFGVYVGHGGVKAAEFAAKNLDKNI 43          
The following BLAST results are available for this feature:
BLAST of DY260025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
P2C25_ARATH2.624e-3139.78Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
P2C02_ARATH9.382e-2855.88Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]
P2C30_ARATH8.488e-1738.80Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]
P2C32_ORYSJ1.273e-1443.56Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C53_ARATH5.329e-1169.77Putative protein phosphatase 2C 53 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YP24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260025 ID=DY260025; Name=DY260025; organism=Citrus clementina; type=EST; length=1031bp
CAAAAACACAAGAACTAAAACAACTGCAACAAATAAAGCAAAGAAAGCAG
AAGCAGAAGGAAGTTTTGGAAAAAAAAAAAAAAAAAGATGTCTTGTTCGG
TAGCAGTTTCAAACTCTCCTGTATTTTCGCCATCATCGTCTCTGTTTTGC
AACAAAACGTCCGTAATCTCTCAGTCTCCAGAAAAAACCCTGAATTTGCC
ATTAACCCATGTAAAGTTTTCGCCTTCTTCATCATTATCACCCACTTCGC
CTTCGCCTTCTTCTCCGCTTCGTTTTCGCCTTCAAAAGCCACCAACTGGG
CTCTCCTCTTCTTCCTCTGCTGCTTGTTCTTCGTCCTCCTCCTCGTCACC
CTCAGCCTTGGCGACCGGCTCGGGGACAGCATCTCAGCAGCAGACGATAT
TGAAGAGAAAGAGGCCGGCGAAGCTGGATATTCCGGTCGCTTCGATGAGT
TTTGGAGGGCTGGTGACTCCAAGAGAGGTGAAAAGAGACGAGGTCGAAGA
TGAGAGAGATGGCTTTTATTCGGTTTATTGTAAACGAGGAAGAAGAGAAG
CGATGGAGGATCGTTTCTCTGCTCTTGTTGATTTTCAAGGAGATTCCAAA
CAGGCAGTTTTTGGTATTTTTGATGGACATGGAGGTGCCCAAGCTGCTGA
GTTTGCGGCAGAGAATTTAGATAAGAACATTTTTGGAGGAAGTCCTGAGA
AGGGATATTGAAAACCAAATTGGGGATGCCGTTAAACCTGGCTATTTAAA
CACGGATTTTGAGTTTCTTAAAAAAAATGTTCTACGGGGGTTCCGGCTGT
GGTGACAGCTTTGGAAACAAAACGAACCTCTGGGGGTCCCCAATGCGGCG
GATTGCCCCGGTTGTTATGACCCAAAGGAGCCTTGGCCGAGGCCCCCACT
TCAAACCCCCGCGCCCCTCTAGGGAAAAAAAAAATCAAAAAATTTAAGAC
CATAGGGCGCCTATGTTTTATTTAGGGCACCGGGATACAGGGTAAATTTC
TGGGGGTCTTAAGCGGGGTTCACGGACGCCT
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