DY260031

Overview
NameDY260031
Unique NameDY260031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260031_ssr685 microsatellite DY260031_ssr685:685..696. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.750e-59
Identity = 129/232 (55.60%), Postives = 155/232 (66.81%), Query Frame = 1
Query:   28 SSSPLVSREARTSIARRN----VAPCSVTLPATSRKGAHPPTAVRAQAGGENKDTSVDVHVNSG----NQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG------GASFSSYDTRLQLPDNCEKDKVKAEPQEWCSLPFHS*TKVEPQVIDVQI 681
            +SSPLVS  +    ++ N     APCSV +P+  R    P T + A+A G+NKDTSVDVH +S     NQGT VERRP R ALD+SPFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL             LVIKGEH+ EE G      G ++SSYDTRL LPDN  KDK+KAE +          T+VE +VIDVQI
Sbjct:    7 TSSPLVSNVSVGGTSKINNNKVSAPCSVFVPSMRR----PTTRLVARATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.692e-59
Identity = 131/241 (54.36%), Postives = 157/241 (65.15%), Query Frame = 1
Query:    4 MAATLSIPSSSPLVSR-----EARTSIARRNVAPCSVTLPATSRKGAHPPTAVRAQAGGENKDTSVDVHVNSGNQG-----TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAEPQEWCSLPFHS*TKVEPQVIDVQI 681
            MA      S+SPLVS       +RT+  +   AP SV  P +      P + + AQA G+NKDTSVDVHV++ NQG     + VERRPRR ALD+SPFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL             LVIKGEH+ EE+G     G ++SSYDTRL LPDN +KDKVKAE +    L     TKVE +V DV+I
Sbjct:    1 MACKTLTCSASPLVSNGVVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVAQATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.493e-52
Identity = 116/235 (49.36%), Postives = 157/235 (66.81%), Query Frame = 1
Query:    4 MAATLSIPS-SSPLVSREARTSIARRNVAPCSVTLPATSRKGAHPPTAVRAQAGGE--NKDTSVDVH-VNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAEPQEWCSLPFHS*TKVEPQVIDVQI 681
            MA ++S+ + +SP++S++  +S+  ++  PC  + P   +        VRAQAGG+  NKD SV+VH VN  +QGT VER+PRR+++DISPFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+             LVIK +HR E  G       S+S YDTRL+LPDNCEK+KVKAE ++         TK+E  VIDVQI
Sbjct:    1 MAQSVSLSTIASPILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 9.475e-52
Identity = 106/182 (58.24%), Postives = 133/182 (73.08%), Query Frame = 1
Query:  160 GGENKDTSVDV-HVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-------SFSSYDTRLQLPDNCEKDKVKAEPQEWCSLPFHS*TKVEPQVIDVQI 681
            GG+NKD SV+V HV+ G+QGT VE++PRRTA+DISPFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL             LVIKG H++E+  G        ++SSYDTRL+LPDNCEKDKVKAE +          TKVE +VIDVQ+
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 8.868e-50
Identity = 115/232 (49.57%), Postives = 142/232 (61.21%), Query Frame = 1
Query:    4 MAATLSIPSSSPLVSREARTSIARRNVAPCSVTLPATSRKGAHPPTAVRAQAGGENKDTSVDVHVNSGNQGTQVERRPR-RTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA----GGASFSSYDTRLQLPDNCEKDKVKAEPQEWCSLPFHS*TKVEPQVIDVQI 681
            MA+TLS  +S+         S++ ++  P SV+ P         P+ +RAQ   EN    V      GNQG+ VE+RP+ R  +D+SPFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL             LVIKGE + E++     G S SSY TRLQLPDNCEKDK+KAE +          TKVE +VIDVQI
Sbjct:    1 MASTLSFAASALCSPLAPSPSVSSKSATPFSVSFPRKI------PSRIRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.525e-41
Identity = 104/230 (45.22%), Postives = 124/230 (53.91%), Query Frame = 1
Query:   40 LVSREARTSIARRNVAPCSVTLPATSRKGAHPPTAVRAQAGGENKDTSVDVHV----NSGNQ-GTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGG-----------ASFSSYDTRLQLPDNCEKDKVKAEPQEWCSLPFHS*TKVEPQVIDVQI 681
            LVSR   +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G  V+RRPRR   DISPFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E   G            S SSYD RL LPD C+K +V+AE +    L      + E +VIDVQ+
Sbjct:   10 LVSR--LSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.370e-40
Identity = 117/247 (47.37%), Postives = 144/247 (58.30%), Query Frame = 1
Query:    4 MAATLSIPSSSPLVSREARTSI--ARRNVAPCSVTLPATSRKGAHPPTAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQVERRPRRT-ALD-ISPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA-----------SFSSYDTRLQLPDNCEKDKVKAEPQEWCSLPFHS*TKVEPQVIDVQI 681
            MAA  ++ S    VS  AR  I  A R   P +V LP++ R          A A  EN+D T+VDVHVN   GNQ G  V+RRPRR+ ALD ISPFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE  GA           S SSYD RL LPD C+K KV+AE +    L     T+VE +VIDVQ+
Sbjct:    1 MAAPFALVSR---VSPAARLPIRAAWRRARP-TVGLPSSGRARQ----LAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.304e-13
Identity = 65/201 (32.34%), Postives = 95/201 (47.26%), Query Frame = 1
Query:   28 SSSPLVSREARTSIARRNVAPCSVTLPATSRKGAHPPTAVRAQAGGENKDTSVDVHVNSGNQGTQVERR--PRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSS----YDTRLQLPDNCEK-DKVKAE 609
            +S+  + R   +SIA R+    SV  PA S +  +          GEN D            G  + RR  PRR     S   + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG    S    + +R+ LPD   K D++KAE
Sbjct:    2 ASALALKRLLSSSIAPRSR---SVLRPAVSSRLFNTNAVRSYDDDGENGD------------GVDLYRRSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAE 183          

HSP 2 Score: 22.3274 bits (46), Expect = 2.304e-13
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  602 RQSLKNGVLYLFIPKQRWSPRS 667
            +  +KNGVL + IPK +   R+
Sbjct:  181 KAEMKNGVLKVVIPKMKEQERN 202          
BLAST of DY260031 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.304e-11
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  271 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSS--YDTRLQLPDNCEK-DKVKAE 609
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE    S     + +R++LP+   K D++KAE
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAE 183          

HSP 2 Score: 21.1718 bits (43), Expect = 3.304e-11
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  602 RQSLKNGVLYLFIPKQRWSPRS 667
            +  +KNGVL + IPK +   R+
Sbjct:  181 KAEMKNGVLKVVIPKIKEDERN 202          
The following BLAST results are available for this feature:
BLAST of DY260031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HS21C_SOLLC2.750e-5955.60Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_PETHY4.692e-5954.36Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_PEA2.493e-5249.36Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_SOYBN9.475e-5258.24Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH8.868e-5049.5725.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT7.525e-4145.22Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ6.370e-4047.3726.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH2.304e-1332.3423.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH3.304e-1134.4823.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YA08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260031 ID=DY260031; Name=DY260031; organism=Citrus clementina; type=EST; length=953bp
TAAATGGCTGCCACATTATCTATCCCCTCCTCCTCCCCCTTGGTATCCCG
CGAGGCCCGGACCTCCATAGCCAGGAGAAATGTGGCCCCCTGCTCCGTAA
CCTTACCGGCCACCTCAAGGAAAGGCGCCCATCCGCCTACAGCCGTGAGA
GCTCAGGCTGGTGGGGAGAACAAGGATACTTCGGTTGACGTCCATGTTAA
TTCCGGTAACCAAGGAACCCAAGTGGAGAGGAGGCCTCGAAGAACGGCTC
TCGATATTTCACCTTTCGGTTTGATGGATCCCTCGTTTCCAACGAGGACA
ATGCGGCAGATGCTGGACACAATGGACCGTCTATTAGAGGATACGATGGC
TTTTCCGGGGAGGAGCCGGGCTGGCGGGGGAGGCCAGGTGAGAACACCGT
GGGACATCAAAGAGGAGGAAAATGAGATCAAAATGAGATTTGACATGCCT
GGACTCTCTAAGGAGGATGTCAAAGTGTCGGTGGAAGATGAAGTCCTTGT
CATTAAAGGAGAGCACAGGGCAGAAGAAGCTGGAGGTGCAAGTTTTAGCT
CTTACGATACTCGTCTCCAGCTTCCTGATAACTGTGAGAAAGATAAGGTC
AAGGCAGAGCCTCAAGAATGGTGTTCTTTACCTTTTCATTCCTAAACAAA
GGTGGAGCCCCAGGTCATTGATGTTCAGATCCCGTAATAATAATAATGAG
TGCCTACCGAAATGTGTATGTTGAAGTTTTGTGATCTACCTGTCCCGCTT
TGTNAGTGGAAAAATAAATTGAAATGCCAAGCCGAAAATGGTGGTCCTTT
CCTTTCCATTCCCAAAACCCCGGTGAAGCCCAGGTCCTTTGATGTCCAAC
CCCGGAATTAAAAGGATGGGGCCCCACCCCCTGTGGTTTTTTAGGGTTTG
GAACCCCCCCCCCCCCCTTTTTTAATGCCCAAAAAAAATTTGAAAATTTT
TTG
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