DY260035

Overview
NameDY260035
Unique NameDY260035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length992
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260035 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.450e-66
Identity = 139/279 (49.82%), Postives = 185/279 (66.31%), Query Frame = 2
Query:   62 MASNGANQPLL-SGFVDSTSQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETHKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCFTIPPLSYGDQSFSTTGGLAFGVVGISSSTMTLAPFYPNLAQVHNEKK 874
            M+S+ A  PLL +  +D+ +Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE+ T+K+RYKC             GTIFLV+VEKM  + AFYCVC T+  L YGD+SF++  G  F V  I +S++ LA F+  +A+++ E K
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNKLRYKCYATCLVLVVLFIVGTIFLVMVEKMPVISAFYCVCSTVTTLGYGDKSFNSEAGRLFAVFWILTSSICLAQFFLYVAELNTENK 279          
BLAST of DY260035 vs. ExPASy Swiss-Prot
Match: KCO5_ARATH (Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic OS=Arabidopsis thaliana GN=KCO5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.794e-24
Identity = 75/267 (28.09%), Postives = 129/267 (48.31%), Query Frame = 2
Query:  107 DSTSQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKAL--------HRYQKVGPTDILKEIE--THKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCFTIPPLSYGDQSFSTTGGLAFGVVGISSSTMTLAPFYPNLAQVHNEKK 874
            DS S   N+   + R L R R+AP   V   D+  K       S   K     ++ +  L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  FV  G G + + LS   +Y++D QE +++  +        H + +    D + + E    ++R K              G + L  VE++ FVD+ Y    ++  + YGD++F T  G  F  V +  ST+ +A  +  LA+   +++
Sbjct:   68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIRMKVCLALCVVVLCIGVGALVLHFVEELGFVDSVYLSVMSVTTVGYGDRAFKTLQGRLFAAVWLLVSTLAVARAFLYLAEARIDRR 330          
BLAST of DY260035 vs. ExPASy Swiss-Prot
Match: KCO6_ARATH (Probable calcium-activated outward-rectifying potassium channel 6 OS=Arabidopsis thaliana GN=KCO6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.518e-23
Identity = 71/246 (28.86%), Postives = 119/246 (48.37%), Query Frame = 2
Query:  155 LRRCRSAPQTDVAA---LDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQE-ILLVKALHRYQKVGPTDILKEIE--THKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCFTIPPLSYGDQSFSTTGGLAFGVVGISSSTMTLAPFYPNLAQVHNEKK 874
            L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++         +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS    Y++D QE  +L  A  R +       + +++    ++R K              G   +  +E++ ++D+FY    ++  + YGD++F T  G  F  + +  ST+ +A  +  LA+   +K+
Sbjct:  118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKRRDEPEKRRSYIIDVKKGRMRIRLKVALALGVVVLCIAVGVGIMHFIEEIGWLDSFYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLVSTLAVARAFLYLAEARVDKR 356          
BLAST of DY260035 vs. ExPASy Swiss-Prot
Match: KCO4_ARATH (Putative outward-rectifying potassium channel 4 OS=Arabidopsis thaliana GN=KCO4 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.856e-21
Identity = 54/201 (26.87%), Postives = 105/201 (52.24%), Query Frame = 2
Query:  275 LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETHKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCFTIPPLSYGDQSFSTTGGLAFGVVGISSSTMTLAPFYPNLAQVHNEKKT 877
            ++ L  YL  G  ++     Q  G +TN  +D+ YF IVT +TVGYGD+VP++  +K+L+   V TG+  +   L++   +++  QE  ++  +++ +     D + E    ++++K              G +FL V E++ ++D+ Y    ++  + YGD++F T  G  F V  +  ST+ +A  +  LA++  ++ T
Sbjct:   39 MILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNRAIRDHIAEDGKIRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSVYLSVISVTTVGYGDKTFKTVEGRGFAVFWLLLSTIAMATLFLYLAEMRIDRTT 239          
BLAST of DY260035 vs. ExPASy Swiss-Prot
Match: KCO2_ARATH (Probable calcium-activated outward-rectifying potassium channel 2 OS=Arabidopsis thaliana GN=KCO2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.166e-21
Identity = 61/209 (29.19%), Postives = 105/209 (50.24%), Query Frame = 2
Query:  269 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKA-------LHRYQKVGPTDILKEIETHKVRYKCXXXXXXXXXXXXXGTIFLVVVEKMSFVDAFYCVCFTIPPLSYGDQSFSTTGGLAFGVVGISSSTMTLAPFYPNLAQVHNEKK 874
            + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  FV  G G + + LS    Y++D QE  +++        L+   KV    I  +    ++R K              G + +  VEK+ ++D+FY    ++  + YGD++F+T  G     + +  ST+ +A     LA+   +K+
Sbjct:  148 QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQENYMLETARNESLNLNDRDKVRSYIIDVKKGRMRIRLKVGLALGVVVLCLGFGVLIMHFVEKIGWLDSFYFSVMSVTTVGYGDRAFNTLAGRLLAAMWLLVSTLAVARAILFLAESRVDKR 356          
The following BLAST results are available for this feature:
BLAST of DY260035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KCO1_ARATH1.450e-6649.82Calcium-activated outward-rectifying potassium cha... [more]
KCO5_ARATH1.794e-2428.09Probable calcium-activated outward-rectifying pota... [more]
KCO6_ARATH1.518e-2328.86Probable calcium-activated outward-rectifying pota... [more]
KCO4_ARATH1.856e-2126.87Putative outward-rectifying potassium channel 4 OS... [more]
KCO2_ARATH3.166e-2129.19Probable calcium-activated outward-rectifying pota... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YA16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260035 ID=DY260035; Name=DY260035; organism=Citrus clementina; type=EST; length=992bp
CTTGATCTGGGGGTGGTCTTGTGTCAGCTTGATAGTCTGAGTCCGCTTTT
GCTATCCTCTAATGGCCTCCAATGGTGCAAATCAGCCCCTGCTCTCAGGA
TTTGTTGATTCCACGTCCCAAACAAATAATAAAGATGCTCCCAAGAGAAG
AAGGCTTCGTCGGTGTAGAAGTGCTCCCCAGACTGATGTTGCTGCTCTAG
ACATAAATGAAAAAGACTCAACTCACCTTTCTGAGTCCCTTTTTGGCAAA
CCCCGCCCAAATTTTAAGAGGGTACTTGTCTACCTGGCTGCCTACCTTGG
TGGGGGGTCATTATCCTTCTATGCTGTCAACAGTCAAATCGAAGGACTAA
AAACCAATGAAATTCTAGATTCTATTTATTTCTGCATCGTGACAATGACC
ACTGTAGGGTATGGAGACCTTGTGCCTAATAGTGTCGTTTCGAAACTACT
TTCCTGTGCTTTTGTTTTCACAGGGATGGGTCTAGTTGGTCTGTTTCTGA
GCAAAGCAGCCGACTATCTGGTCGACAAGCAGGAAATATTGCTGGTTAAA
GCCCTACACAGGTATCAAAAAGTTGGCCCCACTGATATTCTAAAGGAGAT
TGAAACCCACAAAGTGAGATACAAATGCATCATCATGTTGGTCCTTGAGT
TGGTTCTCATTCTCGTTGGGACCATCTTCCTGGTTGTGGTTGAGAAAATG
AGCTTTGTTGATGCGTTCTATTGTGTTTGTTTCACCATCCCCCCCCTAAG
CTATGGTGACCAGAGCTTCTCCACTACCGGAGGGCTTGCCTTTGGTGTAG
TTGGGATCTCCAGTAGTACCATGACCTTAGCACCGTTCTACCCAAACCTT
GCCCAAGTCCATAACGAAAAAAAAACAAAAGGGCCTCCCCCATTTGGTTT
CTTACCCGAAAAACCCCCCCCCTTTATTTGGAAGCCCCTGAAATTTGATA
AAAAAAGGGGGTTGGCCGGGTAATTTTAATTTTCCATAAAAT
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