DY260047

Overview
NameDY260047
Unique NameDY260047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length902
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.154e-19
Identity = 52/107 (48.60%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   93 MTSQFIQNPESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            M SQ    P+SI D  VKDARG++VDLS YKG                                 LEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+KVD+
Sbjct:    1 MASQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDV 107          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.571e-19
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  111 QNPESIFDLSVKDARGHEVDLSTYK---------------------------------GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            + PES+++LS++DA+G+ + LS YK                                 GLEILAFPCNQFG+EEPG+NDQI DFVCTRFKSEFPIF K+++
Sbjct:    4 KEPESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEV 104          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.276e-18
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  111 QNPESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            Q+ ++++D +VKDA+G++VDLS YKG                                  EILAFPCNQFG++EPG+N++I DFVCT+FKSEFPIF+K+D+
Sbjct:    4 QSKKTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDV 104          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.848e-18
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 3
Query:   75 SRADNRMTSQFIQNPESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            SR+++ M +     P+S++D +VKDA+G++VDLS YKG                                  EILAFPCNQFG +EPG+N++I  F CTRFK+E+PIF+KVD+
Sbjct:   58 SRSEHSMAAS--SEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDV 168          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.411e-17
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   93 MTSQFIQNPESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            M S     P+S+ +  V+DARG++VDLS YKG                                 LEILAFPCNQFG +EPGSN+++ +F CTRFK+E+PIF+KVD+
Sbjct:    1 MASDSSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDV 107          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.411e-17
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  111 QNPESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            Q+  S+ D +VKDA+G +VDLS YKG                                 LEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+KVD+
Sbjct:    4 QSKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDV 104          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  117 PESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            P+SI+D +VKDA+G++VDLS YKG                                 LEILAFPCNQFG +EPGS ++I + VCTRFK+E+PIF+KVD+
Sbjct:    8 PQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDV 106          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.104e-17
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 3
Query:  117 PESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            P+SI+D +VKDA+G++VDLS YKG                                 LEILAFPCNQFG +EPGS ++I + VCTRFK+E+PIF+KVD+
Sbjct:    8 PQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDV 106          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.144e-17
Identity = 45/100 (45.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  114 NPESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKVDM 314
            NP+S++D +VKDA+G +VDLS YKG                                 LEILAFPCNQFG +EPG+ + I   VCTRFK+E+PIF+KVD+
Sbjct:    7 NPQSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDV 106          
BLAST of DY260047 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.741e-16
Identity = 46/100 (46.00%), Postives = 59/100 (59.00%), Query Frame = 3
Query:  117 PESIFDLSVKDARGHEVDLSTYKG---------------------------------LEILAFPCNQFGEEEPGS-NDQIADFVCTRFKSEFPIFEKVDM 314
            P+SI+D +VKDA+G++VDLS YKG                                 LEILAFPCNQFG +EPGS  + I + VCTRFK+E+PIF+KVD+
Sbjct:    8 PQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDV 107          
The following BLAST results are available for this feature:
BLAST of DY260047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GPX4_MESCR1.154e-1948.60Probable phospholipid hydroperoxide glutathione pe... [more]
GPX8_ARATH2.571e-1947.52Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX1_HELAN1.276e-1844.55Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX6_ARATH4.848e-1841.59Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL1.411e-1742.99Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_CITSI1.411e-1746.53Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC4.104e-1746.46Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_NICSY4.104e-1746.46Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SOLLC9.144e-1745.00Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI7.741e-1646.00Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YB08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260047 ID=DY260047; Name=DY260047; organism=Citrus clementina; type=EST; length=902bp
GGCTTCCTCTCCGTTCCGTCGTGACTGTAGTCAACTTCATTTTTGTCAGA
AACCTTTTCCTTCGTCTTTTAAAGAGCAGAGCAGATAATAGGATGACAAG
CCAGTTTATACAAAACCCGGAGTCAATTTTTGACTTATCTGTCAAGGATG
CCAGAGGCCATGAGGTAGATCTCAGCACATACAAAGGCTTAGAGATTCTG
GCATTTCCATGCAATCAATTTGGTGAAGAGGAACCAGGAAGTAATGATCA
GATCGCAGATTTTGTCTGCACTCGCTTCAAATCAGAGTTTCCAATTTTTG
AAAAGGTAGATATGTGATATCTAGTTGCTCTTAAATCTGAATGCTCCTGA
GTCCTGAAGTGCTCGGCAATACAAGGGTTGTCTTAGATATTGACTATTAG
TTCTAGATTTGCATGTATTGTGTCATTTTAGTTACTCTACTAGCTTTAAC
CAAATCGGTTTTCCTGTCATTTGGATTGTTGACTAGTAATGTTGGACATT
GTTGTACGATTTTTATTTTTTGTGATTAATAACCATTGACCCTGCTGGTT
TTGTTTAAAAAAAAAAAAAAAAAAAAAACCCACCTTTCCTGCACAAGTTT
GGCTTAATAAAAAGCCTTGCTTACCAATTTTGTGCCACCGACCGGGTCCC
ATCCCCCAAATAAAAACCTTTTTTCCCCCCCCGCCAAATCCCCCCAAAGG
GGGTCCATTAACGGGGCCAACCGTTCTCCGGCCCCCCGGCCCGGTCCCCA
ATCCCCGGGTTCCCTGCCCCAAAAAAAAAATATCTCCCGGTGAAAAAACC
CCCCGCGCCCCATGGCACCCGCTTTTTTTCCCTCCGGTTCTCCCACCCCC
CTTTTTAAAAAAACCCTCCCTGTTGAAAGGAGAAAACCCCCCCGGGGCTC
TC
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