DY260089
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 1.090e-46 Identity = 89/155 (57.42%), Postives = 100/155 (64.52%), Query Frame = 3 Query: 117 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAH SE+RV+V GLPSSASWQDLKDHMRK GDVCF+ Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAH-------GGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148 HSP 2 Score: 38.891 bits (89), Expect = 1.090e-46 Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 1 Query: 583 EVSRDSEGTYGVVDYTNPEDMKYAIPK 663 +V RD+ GT GVVDYT EDMKYA+ K Sbjct: 149 QVYRDARGTTGVVDYTCYEDMKYALKK 175
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.350e-33 Identity = 74/147 (50.34%), Postives = 84/147 (57.14%), Query Frame = 3 Query: 141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SEYRVIV GLP S SWQDLKDHMR+AGDVC+A Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 149 HSP 2 Score: 25.0238 bits (53), Expect = 8.350e-33 Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2 Query: 659 RKLDDTEFKNPLGKRAHNR*KNTNPLPP 742 RKLD+T+F++ G+ A+ R K P P Sbjct: 172 RKLDNTKFRSHEGETAYIRVKVDGPRSP 199 HSP 3 Score: 24.2534 bits (51), Expect = 8.350e-33 Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1 Query: 601 EGTYGVVDYTNPEDMKYAIPK 663 +GT GVV++ EDM YA+ K Sbjct: 154 DGT-GVVEFVRKEDMTYAVRK 173
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3) HSP 1 Score: 133.265 bits (334), Expect = 1.083e-32 Identity = 73/147 (49.66%), Postives = 84/147 (57.14%), Query Frame = 3 Query: 141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SEYRVIV GLP S SWQDLKDHMR+AGDVC+A Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 150 HSP 2 Score: 25.0238 bits (53), Expect = 1.083e-32 Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2 Query: 659 RKLDDTEFKNPLGKRAHNR*KNTNPLPP 742 RKLD+T+F++ G+ A+ R K P P Sbjct: 173 RKLDNTKFRSHEGETAYIRVKVDGPRSP 200 HSP 3 Score: 24.2534 bits (51), Expect = 1.083e-32 Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1 Query: 601 EGTYGVVDYTNPEDMKYAIPK 663 +GT GVV++ EDM YA+ K Sbjct: 155 DGT-GVVEFVRKEDMTYAVRK 174
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 2.373e-32 Identity = 70/153 (45.75%), Postives = 85/153 (55.56%), Query Frame = 3 Query: 123 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 G + +YVGNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE + YRVIV GLP + SWQDLKDHMR AGDVC+A Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR----GVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYA 152 HSP 2 Score: 27.335 bits (59), Expect = 2.373e-32 Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 1 Query: 583 EVSRDSEGTYGVVDYTNPEDMKYAIPK 663 +V+RD GT GVV++T ED+KYA+ K Sbjct: 153 DVARD--GT-GVVEFTRYEDVKYAVRK 176 HSP 3 Score: 25.0238 bits (53), Expect = 2.373e-32 Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 2 Query: 659 RKLDDTEFKNPLGKRAHNR*KNTN 730 RKLDDT+F++ G+ A+ R + N Sbjct: 175 RKLDDTKFRSHEGETAYIRVREDN 198
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 4.005e-32 Identity = 73/147 (49.66%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ RDGY++DG RLRVE SEYRVIV GLP S SWQDLKDHMR+AGDVC+A Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPR----SGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 159 HSP 2 Score: 25.0238 bits (53), Expect = 4.005e-32 Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2 Query: 659 RKLDDTEFKNPLGKRAHNR*KNTNPLPP 742 RKLD+T+F++ G+ A+ R K P P Sbjct: 182 RKLDNTKFRSHEGETAYIRVKVDGPRSP 209 HSP 3 Score: 24.2534 bits (51), Expect = 4.005e-32 Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1 Query: 601 EGTYGVVDYTNPEDMKYAIPK 663 +GT GVV++ EDM YA+ K Sbjct: 164 DGT-GVVEFVRKEDMTYAVRK 183
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.196e-32 Identity = 72/152 (47.37%), Postives = 84/152 (55.26%), Query Frame = 3 Query: 141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SEYRV+V GLP S SWQDLKDHMR+AGDVC+A Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYA 169 HSP 2 Score: 25.0238 bits (53), Expect = 5.196e-32 Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2 Query: 659 RKLDDTEFKNPLGKRAHNR*KNTNPLPP 742 RKLD+T+F++ G+ A+ R K P P Sbjct: 192 RKLDNTKFRSHEGETAYIRVKVDGPRSP 219 HSP 3 Score: 24.2534 bits (51), Expect = 5.196e-32 Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1 Query: 601 EGTYGVVDYTNPEDMKYAIPK 663 +GT GVV++ EDM YA+ K Sbjct: 174 DGT-GVVEFVRKEDMTYAVRK 193
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 3.411e-29 Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SE RV+V GLP S SWQDLKDHMR+AGDVC+A Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 3.411e-29 Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SE RV+V GLP S SWQDLKDHMR+AGDVC+A Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3) HSP 1 Score: 129.413 bits (324), Expect = 3.411e-29 Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SE RV+V GLP S SWQDLKDHMR+AGDVC+A Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 3.411e-29 Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 3 Query: 141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581 IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE SE RV+V GLP S SWQDLKDHMR+AGDVC+A Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150 The following BLAST results are available for this feature:
BLAST of DY260089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260089 ID=DY260089; Name=DY260089; organism=Citrus clementina; type=EST; length=1051bpback to top |