DY260089

Overview
NameDY260089
Unique NameDY260089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1051
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260089_ssr407 microsatellite DY260089_ssr407:407..418. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.090e-46
Identity = 89/155 (57.42%), Postives = 100/155 (64.52%), Query Frame = 3
Query:  117 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAH                                          SE+RV+V GLPSSASWQDLKDHMRK GDVCF+
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAH-------GGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFS 148          

HSP 2 Score: 38.891 bits (89), Expect = 1.090e-46
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  583 EVSRDSEGTYGVVDYTNPEDMKYAIPK 663
            +V RD+ GT GVVDYT  EDMKYA+ K
Sbjct:  149 QVYRDARGTTGVVDYTCYEDMKYALKK 175          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.350e-33
Identity = 74/147 (50.34%), Postives = 84/147 (57.14%), Query Frame = 3
Query:  141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 149          

HSP 2 Score: 25.0238 bits (53), Expect = 8.350e-33
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  659 RKLDDTEFKNPLGKRAHNR*KNTNPLPP 742
            RKLD+T+F++  G+ A+ R K   P  P
Sbjct:  172 RKLDNTKFRSHEGETAYIRVKVDGPRSP 199          

HSP 3 Score: 24.2534 bits (51), Expect = 8.350e-33
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  601 EGTYGVVDYTNPEDMKYAIPK 663
            +GT GVV++   EDM YA+ K
Sbjct:  154 DGT-GVVEFVRKEDMTYAVRK 173          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.083e-32
Identity = 73/147 (49.66%), Postives = 84/147 (57.14%), Query Frame = 3
Query:  141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 150          

HSP 2 Score: 25.0238 bits (53), Expect = 1.083e-32
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  659 RKLDDTEFKNPLGKRAHNR*KNTNPLPP 742
            RKLD+T+F++  G+ A+ R K   P  P
Sbjct:  173 RKLDNTKFRSHEGETAYIRVKVDGPRSP 200          

HSP 3 Score: 24.2534 bits (51), Expect = 1.083e-32
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  601 EGTYGVVDYTNPEDMKYAIPK 663
            +GT GVV++   EDM YA+ K
Sbjct:  155 DGT-GVVEFVRKEDMTYAVRK 174          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.373e-32
Identity = 70/153 (45.75%), Postives = 85/153 (55.56%), Query Frame = 3
Query:  123 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            G   + +YVGNLP D+RE EVED+F+KYGRI  +++K   R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE                                             + YRVIV GLP + SWQDLKDHMR AGDVC+A
Sbjct:    5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR----GVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYA 152          

HSP 2 Score: 27.335 bits (59), Expect = 2.373e-32
Identity = 15/27 (55.56%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  583 EVSRDSEGTYGVVDYTNPEDMKYAIPK 663
            +V+RD  GT GVV++T  ED+KYA+ K
Sbjct:  153 DVARD--GT-GVVEFTRYEDVKYAVRK 176          

HSP 3 Score: 25.0238 bits (53), Expect = 2.373e-32
Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 2
Query:  659 RKLDDTEFKNPLGKRAHNR*KNTN 730
            RKLDDT+F++  G+ A+ R +  N
Sbjct:  175 RKLDDTKFRSHEGETAYIRVREDN 198          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.005e-32
Identity = 73/147 (49.66%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPR----SGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYA 159          

HSP 2 Score: 25.0238 bits (53), Expect = 4.005e-32
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  659 RKLDDTEFKNPLGKRAHNR*KNTNPLPP 742
            RKLD+T+F++  G+ A+ R K   P  P
Sbjct:  182 RKLDNTKFRSHEGETAYIRVKVDGPRSP 209          

HSP 3 Score: 24.2534 bits (51), Expect = 4.005e-32
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  601 EGTYGVVDYTNPEDMKYAIPK 663
            +GT GVV++   EDM YA+ K
Sbjct:  164 DGT-GVVEFVRKEDMTYAVRK 183          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.196e-32
Identity = 72/152 (47.37%), Postives = 84/152 (55.26%), Query Frame = 3
Query:  141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                  SEYRV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYA 169          

HSP 2 Score: 25.0238 bits (53), Expect = 5.196e-32
Identity = 12/28 (42.86%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  659 RKLDDTEFKNPLGKRAHNR*KNTNPLPP 742
            RKLD+T+F++  G+ A+ R K   P  P
Sbjct:  192 RKLDNTKFRSHEGETAYIRVKVDGPRSP 219          

HSP 3 Score: 24.2534 bits (51), Expect = 5.196e-32
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  601 EGTYGVVDYTNPEDMKYAIPK 663
            +GT GVV++   EDM YA+ K
Sbjct:  174 DGT-GVVEFVRKEDMTYAVRK 193          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 3.411e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 3.411e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 3.411e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
BLAST of DY260089 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.411e-29
Identity = 71/147 (48.30%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  141 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA 581
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYA 150          
The following BLAST results are available for this feature:
BLAST of DY260089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SFRS1_ARATH1.090e-4657.42Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFR1B_DANRE8.350e-3350.34Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK1.083e-3249.66Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
RSP3_CAEEL2.373e-3245.75Probable splicing factor, arginine/serine-rich 3 O... [more]
SFR1A_DANRE4.005e-3249.66Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_XENTR5.196e-3247.37Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
SFRS1_PONAB3.411e-2948.30Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG3.411e-2948.30Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE3.411e-2948.30Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN3.411e-2948.30Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YE09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260089 ID=DY260089; Name=DY260089; organism=Citrus clementina; type=EST; length=1051bp
CTCCATCGGAAGCTTTGGTCGTTTTCGGTAAGGACCGGCGGGTCGTCACG
TGGTGGTTCAGCGACGCTTCTCCTGCTCATAAATCTTGTGAAATTTTATA
GTCCTTACCATCAGAAATGAGTGGTCGTTTTTCTCGTACAATCTATGTTG
GCAACCTGCCCTCTGATATAAGAGAATATGAAGTTGAGGATCTCTTTTAC
AAGTATGGCCGTATATTGGATATTGAATTAAAGATCCCCCCTCGCCCGCC
ATGTTATTGTTTTGTTGAGTTTGAGAATGCTCGTGATGCCGAAGATGCTA
TTAGAGGTCGTGATGGCTATAACTTTGATGGTTGTCGTTTAAGGGTTGAG
CTCGCCCATGGTGGTAGTGGTAGAGGTCCATCATCAAGTGATCGTCGTGG
TGGCTATGGTGGTGGTGGTGCTGGTGGTGCTGGTGCTGGTGCTGGTGCTG
GTGCTGGTGCTGGTCGTTTTGGCATCTCACGCCATTCTGAATATCGAGTT
ATTGTCCGCGGGCTTCCTTCTTCAGCTTCCTGGCAGGATTTAAAGGATCA
TATGCGAAAAGCAGGCGATGTTTGTTTTGCCTGAAGTTTCCCGTGATAGT
GAGGGGACTTATGGGGTCGTTGATTATACTAATCCTGAAGACATGAAATA
TGCAATTCCGAAAACTTGATGACACTGAATTTAAAAATCCCTTGGGCAAG
AGGGCGCATAACCGGTGAAAAAATACGAACCCACTTCCTCCACGAACCCT
CATTTAAAGCCGAAATTAAAAGCCCAAACCAAAAGCCAAATTTGGGCGAA
AAAATAAAAATAAAATCATTAAAAGCCTTCCTGTTTCCCAATCAGTTGTC
AAGAACTATTTCTGCCTTCCCCCGGAACAAGCATTCCAAGGCAAAAATCA
AGGTCCCCGGTACATTACCACCGAAAAAACGTGCCTTTCCGACAGTGGGC
CGTATTTCTCATATACCGAGTTCCAAACTCTTCCCACAGCCCGGTTTTGG
TCTAAATTACATTTTTACGACGCCCCACAACACATAACCACAATGGCATA
A
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