DY260102

Overview
NameDY260102
Unique NameDY260102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length840
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1414 contig Ccv1_Contig1414:1..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260102 vs. ExPASy Swiss-Prot
Match: Y5483_ARATH (Uncharacterized GTP-binding protein At5g64813 OS=Arabidopsis thaliana GN=At5g64813 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.880e-40
Identity = 93/187 (49.73%), Postives = 110/187 (58.82%), Query Frame = 2
Query:  254 FWKERERENKELNGGPPTGQVRVLVVGDSGVGKSSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERDFFVELWDISRPERYKDCRSILYSQSMVLFLFLIRPRKKTKTACRSGQLKLPQLEPFPAPPRSWGSRCPSRA*VVIGNKAEVAAXXXXXXXXXXXXDPPPSWGEKPG 814
            FW+ERERENKE    P  GQVRVLVVGDSGVGK+SLV+LI KGSS  RP QTIGCTVGVKHITY              ERDFFVELWD+S  ERYKDCRS+ YSQ   +       +++TKT+ +    ++     F AP  S G        +V+GNKA++AA            D    W EK G
Sbjct:    3 FWRERERENKEQILAPLCGQVRVLVVGDSGVGKTSLVHLINKGSSIVRPPQTIGCTVGVKHITYGSPASSSSSIQGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLPSGGPGGLPVPYIVVGNKADIAAKEGTKGSSGNLVDAARHWVEKQG 189          
BLAST of DY260102 vs. ExPASy Swiss-Prot
Match: RABL3_DANRE (Rab-like protein 3 OS=Danio rerio GN=rabl3 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.910e-11
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  311 QVRVLVVGDSGVGKSSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERDFFVELWD----ISRPERYKDCRSILYS 565
            +V+VLV+GDSGVGKSSLV+L+ +      PS T+GC+V V+   Y              E+ F++ELWD    +      K  R++ Y+
Sbjct:    6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDY--------REGTPEEKAFYIELWDVGGSVGSASSVKSTRAVFYN 86          

HSP 2 Score: 30.0314 bits (66), Expect = 1.910e-11
Identity = 16/47 (34.04%), Postives = 25/47 (53.19%), Query Frame = 1
Query:  556 FVFPINGVIFVPDPSQKKDKNSLQKWAVEIATIGTFSRPSSLLGVPV 696
            F   +NG+I V D + KK   +L +W++E       S+ SS  G+ V
Sbjct:   84 FYNSVNGIILVHDLTNKKSSQNLYRWSLE-----ALSKDSSPTGIIV 125          
BLAST of DY260102 vs. ExPASy Swiss-Prot
Match: RABL3_XENTR (Rab-like protein 3 OS=Xenopus tropicalis GN=rabl3 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 7.039e-11
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  311 QVRVLVVGDSGVGKSSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERDFFVELWD----ISRPERYKDCRSILYS 565
            +V+VLV+GDSGVGKSSLV+L+ +      PS T+GC+V V+   Y              E+ +++ELWD    +      K  R++ Y+
Sbjct:    6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRLHEY--------REGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYN 86          

HSP 2 Score: 28.8758 bits (63), Expect = 7.039e-11
Identity = 11/29 (37.93%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  556 FVFPINGVIFVPDPSQKKDKNSLQKWAVE 642
            F   +NG+I V D + KK   +L +W++E
Sbjct:   84 FYNAVNGIILVHDLTNKKSSQNLYRWSLE 112          
BLAST of DY260102 vs. ExPASy Swiss-Prot
Match: RABL3_BOVIN (Rab-like protein 3 OS=Bos taurus GN=RABL3 PE=2 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 7.039e-11
Identity = 32/89 (35.96%), Postives = 49/89 (55.06%), Query Frame = 2
Query:  311 QVRVLVVGDSGVGKSSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERDFFVELWD----ISRPERYKDCRSILYS 565
            +V+VLV+GDSGVGKSSLV+L+ +      PS T+GC+V V+   Y              E+ +++ELWD    +      K  R++ Y+
Sbjct:    6 RVKVLVLGDSGVGKSSLVHLLCQNQVLGNPSWTVGCSVDVRVHDY--------KEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYN 86          

HSP 2 Score: 28.8758 bits (63), Expect = 7.039e-11
Identity = 11/29 (37.93%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  556 FVFPINGVIFVPDPSQKKDKNSLQKWAVE 642
            F   +NG+I V D + KK   +L +W++E
Sbjct:   84 FYNSVNGIILVHDLTNKKSSQNLYRWSLE 112          
BLAST of DY260102 vs. ExPASy Swiss-Prot
Match: RABL3_MOUSE (Rab-like protein 3 OS=Mus musculus GN=Rabl3 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 7.039e-11
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 2
Query:  311 QVRVLVVGDSGVGKSSLVNLIVKGSSFSRPSQTIGCTVGVKHITYXXXXXXXXXXXXXXERDFFVELWD----ISRPERYKDCRSILYS 565
            +V+VLV+GDSGVGKSSLV+L+        PS T+GC+V ++   Y              E+ +++ELWD    +      K  R++ Y+
Sbjct:    6 RVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDY--------KEGTPEEKTYYIELWDVGGSVGSASSVKSTRAVFYN 86          

HSP 2 Score: 30.0314 bits (66), Expect = 7.039e-11
Identity = 11/30 (36.67%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  556 FVFPINGVIFVPDPSQKKDKNSLQKWAVEI 645
            F   +NG+I V D + KK   +L +W++E+
Sbjct:   84 FYNSVNGIILVHDLTNKKSSQNLYRWSLEV 113          
The following BLAST results are available for this feature:
BLAST of DY260102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y5483_ARATH6.880e-4049.73Uncharacterized GTP-binding protein At5g64813 OS=A... [more]
RABL3_DANRE1.910e-1137.08Rab-like protein 3 OS=Danio rerio GN=rabl3 PE=2 SV... [more]
RABL3_XENTR7.039e-1135.96Rab-like protein 3 OS=Xenopus tropicalis GN=rabl3 ... [more]
RABL3_BOVIN7.039e-1135.96Rab-like protein 3 OS=Bos taurus GN=RABL3 PE=2 SV=... [more]
RABL3_MOUSE7.039e-1134.83Rab-like protein 3 OS=Mus musculus GN=Rabl3 PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YF03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260102 ID=DY260102; Name=DY260102; organism=Citrus clementina; type=EST; length=840bp
GACGAACTGGGTATTAAGCATTGTCTTGAATTGTTTCGATTCCGTCGAGA
AATGTTCGCCGTTGAGGTTTTGTGTTTGAGCTTAGATCCTGGCTTGAATT
GCTTGTGATATGGAACCCATTTGGAGAAATTGTAGTCGTGGATTGAATTT
GAGTAGTTTATTTGATGGGACCTGATTGCAAAGAAGTGTGTAGTTTTATG
GTGTTTGATTTCGGTTTGTTTTGGGGGTGATTTTGATTAAAAGTGAAAAT
ATGTTTTGGAAGGAACGTGAGAGGGAGAACAAAGAGCTTAATGGCGGCCC
ACCTACTGGGCAAGTTCGAGTTCTTGTTGTTGGAGACTCAGGTGTGGGGA
AAAGTTCTCTTGTTAATCTGATTGTCAAAGGTTCTTCCTTTTCTCGCCCT
TCCCAAACAATTGGATGTACAGTTGGTGTGAAGCACATTACTTATGGAAG
TTCTGGTAGCTCCTCGAATAGCATCAAGGGGGATTCTGAGAGAGATTTCT
TTGTTGAACTTTGGGATATATCACGACCTGAGAGATACAAAGATTGTAGG
TCTATTTTGTATTCCCAATCAATGGTGTTATTTTTGTTCCTGATCCGTCC
CAGAAAAAAGACAAAAACAGCCTGCAGAAGTGGGCAGTTGAAATTGCCAC
AATTGGAACCTTTTCCCGCCCCTCCTCGCTCCTGGGGGTCCCGGTGCCCT
TCCCGCGCCTAAGTTGTTATTGGGAACAAAGCTGAAGTTGCCGCCAAAAA
AGGAACAAAAGGAAACCTGGGCAATCTTGGTGACCCCCCCCCTTCGTGGG
GTGAAAAACCAGGGTTTGGCCTCCCCCCACGGAGGAAACT
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