DY260103

Overview
NameDY260103
Unique NameDY260103
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260103_ssr640 microsatellite DY260103_ssr640:640..649. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14641 contig Ccv1_Contig14641:1..1029. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.622e-45
Identity = 93/180 (51.67%), Postives = 125/180 (69.44%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDTLWRTWLPDDEFLKSSEGSKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIP-NLNMTWEFPVIEG-YKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDSYHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKM 537
            ++R+NVGG K+TPFNDTLWRTW+ DD +L     ++R ++T    YQ+GGA+REI PDNVY TA+ +   N  +    N++W F V E    +LVRLHFCDI S SL  L+FNV++N  LA+KD+DLS +  + LASP Y DFV +S  SG+L +SVGPSD S    V+ +LN VEIM++
Sbjct:  213 VHRINVGGSKLTPFNDTLWRTWVVDDNYLLLRAAARRAWTTHSPNYQNGGATREIAPDNVYMTAQEMDRDNQELQARFNISWGFQVDEKRVLHLVRLHFCDIVSSSLNQLYFNVFINEYLAFKDVDLSTLTFHVLASPLYIDFVAESDRSGMLRISVGPSDLSNPARVNALLNGVEIMRI 392          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 7.890e-39
Identity = 90/189 (47.62%), Postives = 116/189 (61.38%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDTLWRTWLPDDEFLKSSEGSKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDSYHSG-VLSVSVGPSDKSLGYAVDGILNAVEIMKMNKSMGILDGE 567
            +YRVNVGGP + P NDTL RTW+PD EFLK    +K V +T          +  I P  VY TA  +A +    PN N++W FP    + YL+RLHFCDI S SL  L+FNVY+NG  A   LDLS VAG +LA+P+Y D VV++   G  L V +GP  +  G   + ILN VE++KM+ S+  LDGE
Sbjct:  240 VYRVNVGGPLIMPQNDTLGRTWIPDKEFLKDENLAKDVKTTPSAIKYPPEVTPLIAPQTVYATAVEMANSLTIDPNFNVSWNFPSNPSFNYLIRLHFCDIVSKSLNDLYFNVYINGKTAISGLDLSTVAG-NLAAPYYKDIVVNATLMGPELQVQIGPMGEDTG-TKNAILNGVEVLKMSNSVNSLDGE 426          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.030e-38
Identity = 88/189 (46.56%), Postives = 113/189 (59.79%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDTLWRTWLPDDEFLKSSEGSKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDS-YHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKMNKSMGILDGE 567
            +YRVNVGGP +TP NDTL RTW PD E+LK    +K V +         G +  I P  VY T   +A +    PN N+TW FP    + Y +RLHFCDI S SL  L+FNVY+NG  A   LDLS VAG  L++P+Y D VV+S   +  L V +GP  +  G   + ILN VE++KM+ S+  LDGE
Sbjct:  239 VYRVNVGGPLITPQNDTLGRTWTPDKEYLKDENLAKDVKTNPTAIIYPPGVTPLIAPQTVYATGAEMADSQTIDPNFNVTWNFPSNPSFHYFIRLHFCDIISKSLNDLYFNVYINGKTAISGLDLSTVAG-DLSAPYYKDIVVNSTLMTSELQVQIGPMGEDTG-KKNAILNGVEVLKMSNSVNSLDGE 425          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: Y5613_ARATH (Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.458e-32
Identity = 79/191 (41.36%), Postives = 111/191 (58.12%), Query Frame = 1
Query:    1 VMYRVNVGGPKVTPFNDTLWRTWLPDDEFLKSSEGSKRV-YSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVD--SYHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKMNKSMGILDG 564
            +++R+N+GG  ++P  D L RTWL D  +    EGS+ V      I Y  GGA+  I P+ VY TA  +A    S PN N++W   V  G+ Y +RLHFCDI S SL  L FNV++N   A   LDLS +   +L + +YADFV++  +  +G + V VGP+        + ILN +EIMK+N + G LDG
Sbjct:  215 ILHRINIGGDLISPKIDPLSRTWLSDKPYNTFPEGSRNVTVDPSTITYPDGGATALIAPNPVYATAEEMADAQTSQPNFNLSWRMSVDFGHDYFIRLHFCDIVSKSLNDLIFNVFINKLSAISALDLSSLTS-ALGTAYYADFVLNASTITNGSILVQVGPTPNLQSGKPNAILNGLEIMKLNNAAGSLDG 404          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.550e-31
Identity = 75/186 (40.32%), Postives = 107/186 (57.53%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDTLWRTWLPDDEFLKSSEGSKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDS-YHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKMNKSMGIL 558
            ++RVN+GGP V   NDTL RTW+PD EFL     +K +     + +  G A+ +  P  VY +   + + +      N+TWEF V  G++Y  R HFCDI S+SL  L+FN+YV+  +A  D+DLS +   +LA  +  DFV  +   S  + VS+GPS     Y  + I+N +EIMKMN S G L
Sbjct:  203 IHRVNMGGPLVASNNDTLTRTWVPDSEFLLEKNLAKSMSKFSTVNFVPGYATEDSAPRTVYGSCTEMNSADNPNSIFNVTWEFDVDPGFQYYFRFHFCDIVSLSLNQLYFNLYVDSMVAATDIDLSTLVDNTLAGAYSMDFVTQTPKGSNKVRVSIGPSTVHTDYP-NAIVNGLEIMKMNNSKGQL 387          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 6.055e-31
Identity = 76/182 (41.76%), Postives = 102/182 (56.04%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDTLWRTWLPDDEFLKSSEGSKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDSYH-SGVLSVSVGPSDKSLGYAVDGILNAVEIMKMNKS 546
            +YRVN+GGP+VTP NDTL R W PD EFL      K V     + Y  G A+ E  P  VY T   + + +    N N+TW+F V  G++Y +R HFCDI S +L  L+FN+YV+     ++LDLS     +L+  +  DFV  S   +  + VS+G S     Y    ILN +EIMKMN S
Sbjct:  202 VYRVNMGGPRVTPSNDTLSRIWEPDSEFLVEKNLVKSVSKIASVDYVPGFATEETAPRTVYGTCTEMNSADNPSSNFNVTWDFDVDPGFQYFLRFHFCDIVSKALNQLYFNLYVDSMDVVENLDLSSYLSNTLSGAYAMDFVTGSAKLTKRIRVSIGRSSVHTDYPT-AILNGLEIMKMNNS 382          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.069e-27
Identity = 72/189 (38.10%), Postives = 105/189 (55.56%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDTLWRTWLPDDEFLKSSEGSKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDS--YHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKMNKSMGILDG 564
            +YR+N+GGP +T  NDTL R W  D E+L  +     V +       S   ++E  P+ VY TA  +   N + P+ N+TW  PV   ++Y VR+HFCDI S +L  L FN+YVN +LA   LDLS +    L  P++ DF+ +     SGVL+VSVGP   S     +  +N +E++K++     L G
Sbjct:  211 VYRLNMGGPLLTSQNDTLGRQWDNDAEYLHVNSSVLVVTANPSSIKYSPSVTQETAPNMVYATADTMGDANVASPSFNVTWVLPVDPDFRYFVRVHFCDIVSQALNTLVFNLYVNDDLALGSLDLSTLTN-GLKVPYFKDFISNGSVESSGVLTVSVGPD--SQADITNATMNGLEVLKISNEAKSLSG 396          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.647e-23
Identity = 72/189 (38.10%), Postives = 108/189 (57.14%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDTLWRTWLP-DDEFLKSSEGSKRVYSTGRIWYQSG--GASREIGPDNVYNTARVI-AATNASIPNL-NMTWEFPVIEGYKYLVRLHFCDIAS-ISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDSYHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKMNKSMG 552
            +YR+NVGG K+TP NDTL RTWLP DD+FL   + ++ + ST    Y  G   A+    PD VY TA+ +  ++N  +  L N+TW F V   +++ +R+HF DI S +S     F ++VNG   Y  +D+       LASPF+ D V  S  SG+L++S+G  + +      G LN +E+M++    G
Sbjct:  207 IYRLNVGGEKITPDNDTLGRTWLPDDDDFLYRKDSARNINSTQTPNYVGGLSSATDSTAPDFVYKTAKAMNRSSNEQVGMLMNVTWSFKVKSNHRHFIRIHFSDILSNLSNSDSDFYLFVNG---YWRVDVKPSEQPRLASPFFKDVVNVSDGSGLLNISIGTKEANKD---AGFLNGLEMMEVLSKSG 389          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: Y1357_ARATH (Probable receptor-like protein kinase At1g30570 OS=Arabidopsis thaliana GN=At1g30570 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.809e-20
Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDT-LWRTWLPDDEFLKSSEGSKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIASISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVD-SYHSGVLSVSVGPSDKSLGYAVDGILNAVEIMKMNKS 546
            MYR+NVGGPK+ P  D  L+RTW  D  ++        V ++  I Y     S  + P  VY TAR+++ T       N++W+F V   + YLVRLHFC++         F +Y+N   A  + D+   AG       Y D++   S  + VL + +GP D S+G + D +L+ +EI K++K+
Sbjct:  228 MYRLNVGGPKLGPSKDLKLYRTWETDLSYMVIENAGVEVKNSSNITYALADDS-PVAPLLVYETARMMSNTEVLEKRFNISWKFEVDPNFDYLVRLHFCELLVDKQNQRIFRIYINNQTAAGNFDIFAHAG-GKNKGIYQDYLDPVSSKNDVLWIQLGP-DSSVGASGDALLSGLEIFKLSKN 407          
BLAST of DY260103 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.184e-18
Identity = 64/194 (32.99%), Postives = 97/194 (50.00%), Query Frame = 1
Query:    4 MYRVNVGGPKVTPFNDT-LWRTWLPDDEFLKSSE-GSKRVYSTGRIWYQSGGASREIGPDNVYNTARVIAATNASIPNLNMTWEFPVIEGYKYLVRLHFCDIAS--ISLGLLFFNVYVNGNLAYKDLDLSIVAGYSLASPFYADFVVDSYHSG---VLSVSVGPSDKSLGYAVDGILNAVEIMKMNKSMGILDG 564
            +YR+NVGG  ++P  DT L+R+W  D  ++  +  G               G    + P +VY+TAR +  T     N N+TW F +  G+ YLVRLHFC+++S    +    F +Y+N   A  + D+ I    S   PF+ D+VV+         L +++ P+  +     D +LN VEI KMN S G L G
Sbjct:  226 VYRLNVGGNDISPSADTGLYRSWYDDQPYIFGAGLGIPETADPNMTIKYPTGTPTYVAPVDVYSTARSMGPTAQINLNYNLTWIFSIDSGFTYLVRLHFCEVSSNITKINQRVFTIYLNNQTAEPEADV-IAWTSSNGVPFHKDYVVNPPEGNGQQDLWLALHPNPVNKPEYYDSLLNGVEIFKMNTSDGNLAG 418          
The following BLAST results are available for this feature:
BLAST of DY260103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
Y5241_ARATH9.622e-4551.67Probable receptor-like protein kinase At5g24010 OS... [more]
Y4391_ARATH7.890e-3947.62Probable receptor-like protein kinase At4g39110 OS... [more]
Y2214_ARATH1.030e-3846.56Probable receptor-like protein kinase At2g21480 OS... [more]
Y5613_ARATH2.458e-3241.36Probable receptor-like protein kinase At5g61350 OS... [more]
HERK_ARATH3.550e-3140.32Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
Y5597_ARATH6.055e-3141.76Probable receptor-like protein kinase At5g59700 OS... [more]
THE1_ARATH1.069e-2738.10Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
Y2232_ARATH4.647e-2338.10Probable receptor-like protein kinase At2g23200 OS... [more]
Y1357_ARATH4.809e-2033.88Probable receptor-like protein kinase At1g30570 OS... [more]
FERON_ARATH1.184e-1832.99Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YF04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260103 ID=DY260103; Name=DY260103; organism=Citrus clementina; type=EST; length=1029bp
GTTATGTATAGGGTCAATGTGGGTGGTCCAAAAGTGACACCATTTAATGA
TACTTTGTGGAGGACATGGTTACCTGATGATGAATTCCTCAAATCTAGTG
AGGGATCAAAAAGGGTGTATTCTACTGGTAGGATCTGGTATCAGAGTGGA
GGGGCAAGCCGTGAAATTGGTCCTGATAATGTTTATAACACTGCCCGGGT
GATTGCTGCCACGAATGCTTCAATTCCTAATTTGAATATGACGTGGGAGT
TTCCTGTGATTGAGGGTTACAAGTATCTTGTTAGGTTGCATTTTTGTGAT
ATTGCAAGTATTTCTCTTGGTTTGCTGTTTTTCAATGTGTATGTTAATGG
GAACTTAGCATACAAAGATTTGGATCTCTCCATTGTTGCGGGTTATTCAT
TGGCTTCTCCGTTTTATGCCGACTTTGTGGTTGATAGTTATCATTCAGGG
GTTTTGAGTGTCAGTGTTGGCCCCTCAGATAAGAGCTTGGGATATGCTGT
TGATGGTATTCTGAATGCAGTGGAAATCATGAAAATGAATAAGTCAATGG
GTATTCTCGACGGAGAGCTCTGTGCAGGATTGATATTGAAGACTTGGCCC
AACGCGAAATGTTGGTATATTGGTTCCCTTGATTGCTGCTGTGTGTGTGA
TGCTAAGCTCATCCTGTGTTTAACCATATAACTTTCCGGGTTTAAGAACT
CGGTGGCCTGGTCCTAAACCGCCCCTGGCTGTTTCCAAAACCACTTCCAA
AGTGGGCCATCACCCCCCCATAAAAAAATTTGCGAAGTGCCCATGGCGCC
CAAAAATTTCCGTGTCAGCACGGGTTATAATTTTCCCAGTGCCTTTCTAT
TTAAAAAAACAATTTTAGTTCCAAACCCCCCAACAAACGCAATCTGCCTC
CAAAATATATGTTCCCGCCTCCTTTGTACGCCAACTCTCATTTTCGCAAA
AACACTTTCTCGTTGCCCCCCCAAAACGCTCCTCTTCTCCTCGAACTCAT
TGGACCCCCTAAATGGCCCTTCCGCACAC
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