DY260105

Overview
NameDY260105
Unique NameDY260105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1100
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260105 vs. ExPASy Swiss-Prot
Match: COG2_HUMAN (Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens GN=COG2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.770e-21
Identity = 49/165 (29.70%), Postives = 88/165 (53.33%), Query Frame = 3
Query:   15 LLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFSNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLD-----ISSAQNSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYQSSLDFLAYLEGYCPSRSAVAK 494
            +L  SL    + GL+  + ++I +CLR YA ID TR+AE +    +V P + ++I     E    +  + L+  Y ++ + V   C+ L +     ISS + + +  +DFL NS+  +++  +++  P  F+PG P  F   Y  S+DF+  LE  C S+++V +
Sbjct:  206 MLQQSLEGLLLEGLQTSDVDIIRHCLRTYATIDKTRDAEALVGQVLVKPYIDEVI----IEQFVESHPNGLQVMYNKLLEFVPHHCRLLREVTGGAISSEKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGSQASVKR 366          

HSP 2 Score: 35.039 bits (79), Expect = 1.770e-21
Identity = 14/28 (50.00%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  502 AEAIYVDFMKQWNVGVYFSLRFQEITGA 585
            A   Y  F K+WN+ VYF +RF+EI G+
Sbjct:  369 AHPAYHSFNKKWNLPVYFQIRFREIAGS 396          
BLAST of DY260105 vs. ExPASy Swiss-Prot
Match: COG2_MOUSE (Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus GN=Cog2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.188e-19
Identity = 46/165 (27.88%), Postives = 87/165 (52.73%), Query Frame = 3
Query:   15 LLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFSNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDI-----SSAQNSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYQSSLDFLAYLEGYCPSRSAVAK 494
            +L  SL    + GL+  + +++ +CLR YA ID T++AE +    +V P + ++I     E    +    L+  Y ++ + V   C+ L ++     SS + + +  +DFL NS+  E++  +++  P  F+PG P  F + Y  S+DF+   E  C S+++V +
Sbjct:  206 MLQQSLEGLLLEGLQTSDVDIVRHCLRTYATIDKTQDAEALVGQVLVKPYVNEVIV----EQFVESHPSGLQLMYNKLLEFVPHHCRLLREVTGGAVSSEKGTIVPGYDFLVNSVWPEIVRGLEEKLPSLFNPGDPDAFHQKYTVSMDFVQRFERQCGSQASVKR 366          

HSP 2 Score: 33.4982 bits (75), Expect = 1.188e-19
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  502 AEAIYVDFMKQWNVGVYFSLRFQEITGA 585
            A   Y +F  +WN+ VYF +RF+E+ G+
Sbjct:  369 AHPAYHNFSNKWNLPVYFQIRFREVAGS 396          
The following BLAST results are available for this feature:
BLAST of DY260105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COG2_HUMAN1.770e-2129.70Conserved oligomeric Golgi complex subunit 2 OS=Ho... [more]
COG2_MOUSE1.188e-1927.88Conserved oligomeric Golgi complex subunit 2 OS=Mu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YF06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260105 ID=DY260105; Name=DY260105; organism=Citrus clementina; type=EST; length=1100bp
AAAGTGCTAGCCTTTTACTGGATGCTAGCTTGGGACATTGTTTTGTGCAT
GGTCTTGAACACCAGAATGCAAATGTAATTTACAACTGTTTGCGTGCCTA
TGCTGCCATCGACAACACCCGGAATGCAGAAGAAATTTTTTCCAATACTG
TTGTGGCTCCGTTGATGCAGAAAATTATCCCGCACGGGCCATCGGAGGCA
CTGGCTGGGGCATCTGGAGATGAACTTGAGAGTGATTATGAACAAATCAA
GCAATGTGTTGAAAAAGACTGTAAATTTTTGTTGGATATATCTTCTGCAC
AAAATTCTGGTTTGCATGTATTTGACTTCCTGGCCAATTCCATCCTGAAG
GAGGTTCTCTCCGCCATTCAGAAGGGAAAACCAGGGGCGTTTTCTCCCGG
AAGACCTACACAGTTCTTGAGAAATTACCAATCAAGCTTGGATTTCTTGG
CTTATCTTGAAGGTTATTGTCCATCCAGATCTGCTGTTGCTAAATTTCCC
AGCGGAAGCTATCTATGTTGACTTCATGAAGCAATGGAATGTTGGAGTTT
ATTTCTCTTTGAGGTTTCAGGAAATAACAGGGGCTCCTGGATTCTGCTCC
CCCGCAGCCAGCCTAGCCCCGGTCAAAATTCAAATCCCACCAAAGGAATT
CCCAAGCCTTACATCAAAACAACTGCCCCCCCCCTTCGAACCCACGAAAC
CCGGCTGGACACCGAGCTTTTCCCCCCCCCCCTGCCCCGCACCAATTTCT
TCCTCCTCCCTTTCCCCCTCTTCCAGAAACCTACATTGGTTTCTACCCGG
TCGGCCCGGTCCGAAACTCCCGTCCAGCCAGCATCCACCCCCACAAACCA
CCGACCCTCCCCACCCCCCCCCACAAAAATCTCTCCATCTACACACTCCC
CCCCTTAACTTTCTCGCGCCCCCCACTTCCTCCCCTACCACACCACCCCC
CCAACCTCCTCCCCCCTCCCTCCCCCCCCCACCCTCCTCCTCTCTCACCC
GCCCAAACCACACATTCTTCCGACCGCCAACCACCCCTGACACACACCCG
GCCCCCCCCCCCCATACTACCTCACACCACACCCCTCCACCCCCCCTCCC
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