DY260112

Overview
NameDY260112
Unique NameDY260112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1164
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11265 contig Ccv1_Contig11265:1029..2192. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260112 vs. ExPASy Swiss-Prot
Match: B3GTC_ARATH (Probable beta-1,3-galactosyltransferase 12 OS=Arabidopsis thaliana GN=B3GALT12 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.007e-16
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 2 
Query:    2 FSTEDVTIGSWMLAMNVHHEDNRAICDPRCTSTSIAVWDIPKCSG 136
            F+ EDVTIGSWMLAM+VHHEDNRA+CDP C+  SIAVWDIPKCSG
Sbjct:  297 FNNEDVTIGSWMLAMDVHHEDNRALCDPHCSPKSIAVWDIPKCSG 341
[Close]
BLAST of DY260112 vs. ExPASy Swiss-Prot
Match: B3GTE_ARATH (Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.777e-13
Identity = 30/45 (66.67%), Postives = 40/45 (88.89%), Query Frame = 2 
Query:    2 FSTEDVTIGSWMLAMNVHHEDNRAICDPRCTSTSIAVWDIPKCSG 136
            F+ EDVTIG+WMLAMNV+HE++  +C+P C+ +S+AVWDIPKCSG
Sbjct:  273 FNNEDVTIGAWMLAMNVNHENHHILCEPECSPSSVAVWDIPKCSG 317
[Close]
BLAST of DY260112 vs. ExPASy Swiss-Prot
Match: B3GTD_ARATH (Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana GN=B3GALT13 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.031e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:    2 FSTEDVTIGSWMLAMNVHHEDNRAICDPRCTSTSIAVWDIPKCSG 136
            FS EDVTIG+WMLAMNV+HE+   +C+P C+  SIAVWDIPKCSG
Sbjct:  271 FSNEDVTIGAWMLAMNVNHENLHTLCEPECSPYSIAVWDIPKCSG 315
The following BLAST results are available for this feature:
BLAST of DY260112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
B3GTC_ARATH1.007e-1682.22Probable beta-1,3-galactosyltransferase 12 OS=Arab... [more]
B3GTE_ARATH1.777e-1366.67Probable beta-1,3-galactosyltransferase 14 OS=Arab... [more]
B3GTD_ARATH3.031e-1371.11Probable beta-1,3-galactosyltransferase 13 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YF17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260112 ID=DY260112; Name=DY260112; organism=Citrus clementina; type=EST; length=1164bp
GTTCAGCACTGAGGATGTAACTATCGGGTCATGGATGCTTGCTATGAACG
TCCACCACGAAGATAACAGAGCAATATGTGATCCTAGATGTACTTCCACA
TCTATAGCAGTGTGGGATATTCCAAAGTGCTCAGGTAACACAATTTTTGT
AACTTGCCCTGCGGTAACTATGTTTCTTATTATCACATGCCCTGCTGTAA
TTGTATTTCTTACTTTCTCAAAGAACTATCTTGATATGTGATTTTGATAC
ATAAAAAATTAAGATTTGAAAATCCCGCTTTCTGTTTAAGTTCTGATGAT
CATGTATTCGTTACACATGAAATATGAAGGTTCCTCTTAAAAGTAGTGAG
ATTGATGGACCGCCAATTGTTAGGGTTCTGTAGGTTTGTTATGATTTTGT
ATTACATTGAGTTGATGAGATGGTGCGAAGTAAGCTATTGAATACAGGAT
TTTTGCACATAACAAGTCATGGTAATGTTATAAATTTTACACGTACCTTA
GGAATATGACGAGGTAGGATGGCTGTCCCAAGGATATCAAGGTCGATAAC
CACACTACCTATAACACTCTCTGTACAAGACCCTCTATCCTATTTAGATC
TTTCTCCTTATTTGACTGCCATTATATTAAGGATGATGATTATGAGGAAG
GAGCCCATTCGGTAGAGCGATGGATCCCTCTAAATGCTAGAAAGGGTTGC
TGGCTTCCATGGGGGACCGCTTCCTCATGATTTGATTGGTGGTCCATTTC
CACCAAAATCCTTGACCCCCCTGTATGGAGCCACCACCCTAGGCTCTTGA
AATCCAACATTCCAAAAATCCCAATGGCCTAAAAATGCTGGGGAACTTGG
GGACCTGTGGACCCCTCCAATATGCCGCCGGGTTTGGCCCAACCTTTTTA
ATGGGGCCATTTGCCGGGCCCCCCAACGGGACATCCAAACCTCCAAAAGC
CGGAAAACAACCTTCCCCCCCAAAATCCCCAAAATTTTTGTGGGGGGCTT
TTAAAAAAAAAAAACCCCCCCTCCCCCAAAAAAAAAATTTTTTTTTTATT
TTTTCCCCAATTTTTTGTCTGGGATTTTTTTCTCCCTCAATACCGCGGGA
AAACTCTTTTTGGGGGAAACCGCGCCCCCCTCCCCCCATTTTTTTTATTA
CCCTTCCTTTTTAA
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