DY260160

Overview
NameDY260160
Unique NameDY260160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length961
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.572e-87
Identity = 133/145 (91.72%), Postives = 142/145 (97.93%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            G YGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RYG L+E+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF+VRV+SQKH++FSLTSPFGGGRPGRVKRRN
Sbjct:   34 GEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRN 178

HSP 2 Score: 71.633 bits (174), Expect = 1.572e-87
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 2 
Query:   29 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGDMGFAAR 151
            MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVG+ G   +
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCK 41
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 7.099e-85
Identity = 131/145 (90.34%), Postives = 142/145 (97.93%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            G YGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RYG L+ESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVLIRQRHIRVG+QLVNIPSF+VR+DSQKHI+F+LTSPFGGGRPGRVKRRN
Sbjct:   34 GEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRN 178

HSP 2 Score: 68.9366 bits (167), Expect = 7.099e-85
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 2 
Query:   29 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            MVHV +YRNYGKTFK PRRPYEKERLD+EL+LVG+ G
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYG 37
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.896e-65
Identity = 109/144 (75.69%), Postives = 130/144 (90.28%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 558
            G YGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R G L+ES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLIRQRHIRVG+Q+VN+PSFVVR+DSQKHI+F+LTSPFGGGRPGRV+R+
Sbjct:   30 GEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRK 173

HSP 2 Score: 43.8986 bits (102), Expect = 2.896e-65
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:   50 RNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            R+Y KT K PRRP+E  RLD+EL+LVG+ G
Sbjct:    4 RSYSKTAKVPRRPFEAARLDSELKLVGEYG 33
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.856e-64
Identity = 110/146 (75.34%), Postives = 131/146 (89.73%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 564
            G YGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R G L+ES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSFVVR+DSQKHI+FSL SPFGGGRPGRVKR+N+
Sbjct:   34 GEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNL 179

HSP 2 Score: 41.5874 bits (96), Expect = 1.856e-64
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 2 
Query:   56 YGKTFKKPRRPYEKERLDAELRLVGDMG 139
            + KT+  PRRPYEK RLD EL+++G+ G
Sbjct:   10 FSKTYVTPRRPYEKARLDQELKIIGEYG 37
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 223.402 bits (568), Expect = 2.022e-63
Identity = 107/145 (73.79%), Postives = 129/145 (88.97%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            G YGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   33 GEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

HSP 2 Score: 40.0466 bits (92), Expect = 2.022e-63
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            KT+  PRRP+EK RLD EL+L+G+ G
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYG 36
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.022e-63
Identity = 107/145 (73.79%), Postives = 129/145 (88.97%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            G YGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   33 GEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

HSP 2 Score: 40.0466 bits (92), Expect = 2.022e-63
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            KT+  PRRP+EK RLD EL+L+G+ G
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYG 36
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 2.022e-63
Identity = 107/145 (73.79%), Postives = 129/145 (88.97%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            G YGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   33 GEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

HSP 2 Score: 40.0466 bits (92), Expect = 2.022e-63
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            KT+  PRRP+EK RLD EL+L+G+ G
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYG 36
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 2.022e-63
Identity = 107/145 (73.79%), Postives = 129/145 (88.97%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            G YGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   33 GEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

HSP 2 Score: 40.0466 bits (92), Expect = 2.022e-63
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            KT+  PRRP+EK RLD EL+L+G+ G
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYG 36
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 2.022e-63
Identity = 107/145 (73.79%), Postives = 129/145 (88.97%), Query Frame = 1 
Query:  127 GRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 561
            G YGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLIRQRHIRV +Q+VNIPSF+VR+DSQKHI+FSL SP+GGGRPGRVKR+N
Sbjct:   33 GEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKN 177

HSP 2 Score: 40.0466 bits (92), Expect = 2.022e-63
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2 
Query:   62 KTFKKPRRPYEKERLDAELRLVGDMG 139
            KT+  PRRP+EK RLD EL+L+G+ G
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYG 36
[Close]
BLAST of DY260160 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 2.874e-62
Identity = 103/150 (68.67%), Postives = 130/150 (86.67%), Query Frame = 1 
Query:  115 VETCGRYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGSLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 564
            ++  G YGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R G L+ES+ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:   28 LKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRL 177

HSP 2 Score: 42.3578 bits (98), Expect = 2.874e-62
Identity = 18/30 (60.00%), Postives = 22/30 (73.33%), Query Frame = 2 
Query:   50 RNYGKTFKKPRRPYEKERLDAELRLVGDMG 139
            R   KT+K PRRP+E  RLDAEL+L G+ G
Sbjct:    6 RKQSKTYKVPRRPFESARLDAELKLAGEYG 35
The following BLAST results are available for this feature:
BLAST of DY260160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS92_ARATH1.572e-8791.7240S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH7.099e-8590.3440S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_PODAN2.896e-6575.6940S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_DROME1.856e-6475.3440S ribosomal protein S9 OS=Drosophila melanogaste... [more]
RS9_RAT2.022e-6373.7940S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PAPAN2.022e-6373.7940S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE2.022e-6373.7940S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN2.022e-6373.7940S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN2.022e-6373.7940S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]
RS9B_SCHPO2.874e-6268.6740S ribosomal protein S9-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260160 ID=DY260160; Name=DY260160; organism=Citrus clementina; type=EST; length=961bp
GTGAGGGTAGCACCTTCGGCGCGCAAAGATGGTGCACGTTTCATTCTACC
GCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAG
CGATTGGATGCTGAGTTGAGACTTGTGGGAGATATGGGCTTCGCTGCAAG
AGGGAACTCTGGAGGGTTCAATACGCACTGAGCCGCATCCGAAATGCTGC
GAGGGATCTTCTCACTCTCGATGAGAAGAACCCACGACGTATTTTTGAGG
GTGAGGCCCTTCTCAGGAGGATGCACAGGTATGGCTCCTTGGAAGAGAGC
CAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTGGAGAACTTTCTTGA
GCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGCATGGCTAAGTCAATTC
ACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTAGGGTTGGAAGGCAG
CTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGATTCCCAGAAGCACAT
TGAATTCTCACTCACAAGTCCATTTGGAGGCGGGCGCCCCGGAAGAGTGA
AGAGAAGGAACATTAAGGCTGCTGCCAAGAAGGCCCCCGGTGGAGATGGA
GATGAAGAGGATGAAGAATAAATTACCCTTGTGTGAGCAGATAGTTTTTT
TATGGTTACCGTAGGAACTCTGGCTGAACTTTGCAAATCGACTTATCCTC
CCCTAAGTTTTATGTTTTTGCCAATTTTCCTCCCATAATAGGAGGTTTTG
CTTGCTTTGTGCTTTTCAGAACACCCCCTTGAAAAGATTTGTTTTTGTTC
TTTTGGGAAGTAACCCTTTGACCCCTAAACTTTTTTTATGCCCAAAATTA
AAATCCCCCGGGTACTTAGCTTTTTTTGGGGCCCCTAAAAAATATAATCA
CAATTTAATGGAAAAATTTGCCCCCTCCCGGCATGGGCCAACCCCATACC
CATTGGAACCG
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