DY260190
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 4.373e-42 Identity = 89/177 (50.28%), Postives = 102/177 (57.63%), Query Frame = 3 Query: 153 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPLVKC-SGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 MASWVLSECGL+PLP ++P+PRTG NP+K RF S TDL C S R++NW L+VSAPLRV +E E+ FDPGAPPPFKL+DIR AIPK CWVKDPW+SM Y FGL F+NWVVWPL W AQ FWAL Sbjct: 1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWAL 162 HSP 2 Score: 29.6462 bits (65), Expect = 4.373e-42 Identity = 18/51 (35.29%), Postives = 26/51 (50.98%), Query Frame = 2 Query: 647 TLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRI--PQFRLPYHGGKIYPR 793 T+F FV H+ G +FSN+P++ G I +PYHG +I R Sbjct: 157 TMFWALFVLGHDCGHGSFSNDPKLN---SVVGHILHSSILVPYHGWRISHR 204
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 3.051e-38 Identity = 84/174 (48.28%), Postives = 99/174 (56.90%), Query Frame = 3 Query: 153 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 MA+W +CGLKPL + PRPRTG + S+ FL + K + K ++C+ R+RNWGLKVSAPLRVA +E E FDPGAPPPF LADIRAAIPK CWVKDPW+SMSY FGL +NW+VWPL W AQ FWAL Sbjct: 1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWAL 166
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 6.584e-33 Identity = 84/193 (43.52%), Postives = 95/193 (49.22%), Query Frame = 3 Query: 156 ASWVLSECGLKPLPHIFPRPRTGI-----NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWALLCPVIIGVRKPFQMNPKL 719 A WVLSECGL+PLP I+ RPR G N K R L KS +L S S+ NW L V+ P+ V+ + GED FD GAPPPF LADIRAAIPK CWVK+PW+SMSY FGL F+NWV WPL W Q FWAL F NPKL Sbjct: 3 AGWVLSECGLRPLPRIYSRPRIGFTSKTTNLLKLRELPDSKSY-NLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKL 190
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.143e-32 Identity = 80/181 (44.20%), Postives = 93/181 (51.38%), Query Frame = 3 Query: 153 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPLVKCSGDFSRD---RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 MA+ VLSECG++PLP I+ PR+ N +K R S S PL G SRD RNW L VS PL +PLE ++ FDPGAPPPF LADIRAAIPK CWVK+PWKS+SY F L +NW+VWPL W AQ FWAL Sbjct: 1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPL--SFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWAL 158 HSP 2 Score: 31.187 bits (69), Expect = 1.143e-32 Identity = 18/52 (34.62%), Postives = 27/52 (51.92%), Query Frame = 2 Query: 644 GTLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRI--PQFRLPYHGGKIYPR 793 GT+F FV H+ G +FSN+P++ G + +PYHG +I R Sbjct: 152 GTMFWALFVLGHDCGHGSFSNDPKLN---SVVGHLLHSSILVPYHGWRISHR 200
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.526e-32 Identity = 71/171 (41.52%), Postives = 83/171 (48.54%), Query Frame = 3 Query: 153 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 MAS VLSECG +PLP +P+ T + L L G +S+ RNW L V+ PL E+ FDPGAPPPF LADIRAAIPK CWVK+PW SMSY FGL F+NW++WPL W AQ FWAL Sbjct: 1 MASSVLSECGFRPLPRFYPKHTTSFASNPKPTFKFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWAL 151 HSP 2 Score: 31.187 bits (69), Expect = 2.526e-32 Identity = 18/52 (34.62%), Postives = 27/52 (51.92%), Query Frame = 2 Query: 644 GTLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRI--PQFRLPYHGGKIYPR 793 GT+F FV H+ G +FSN+P++ G + +PYHG +I R Sbjct: 145 GTMFWALFVLGHDCGHGSFSNDPRLN---SVAGHLLHSSILVPYHGWRISHR 193
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 7.086e-25 Identity = 56/120 (46.67%), Postives = 61/120 (50.83%), Query Frame = 3 Query: 321 RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 RNW L V+ PL V P+E E FDPGAPPPF LADIRAAIPK CWVK+PWKSMSY F L +NW+VWPL W AQ FWAL Sbjct: 17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWAL 116 HSP 2 Score: 31.187 bits (69), Expect = 7.086e-25 Identity = 18/52 (34.62%), Postives = 27/52 (51.92%), Query Frame = 2 Query: 644 GTLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRI--PQFRLPYHGGKIYPR 793 GT+F FV H+ G +FSN+P++ G + +PYHG +I R Sbjct: 110 GTMFWALFVLGHDCGHGSFSNDPRLN---SVVGHLLHSSILVPYHGWRISHR 158
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.594e-18 Identity = 39/71 (54.93%), Postives = 44/71 (61.97%), Query Frame = 3 Query: 453 FDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 FDPGAPPPFK+ADIRAAIPK CW K +S+SY L F++W WPL WPAQ FWAL Sbjct: 22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWAL 92 HSP 2 Score: 24.6386 bits (52), Expect = 6.594e-18 Identity = 16/50 (32.00%), Postives = 25/50 (50.00%), Query Frame = 2 Query: 644 GTLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRIPQFRLPYHGGKIYPR 793 GT+F FV H+ G +FSN ++ + G +PY+G +I R Sbjct: 86 GTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILH-SLILVPYNGWRISHR 134
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.474e-16 Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 3 Query: 453 FDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 FDP APPPFK+A+IRA+IPK CWVK+PW+S+SY L FDNW++W + P Q FWAL Sbjct: 25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWAL 95
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 4.288e-16 Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 3 Query: 453 FDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 FDP A PPFK+ DIRAAIPK CWVK P +SMSY L FD+W +WPL W AQ FWA+ Sbjct: 23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAI 93
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.128e-15 Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 3 Query: 453 FDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665 FDP A PPFK+ DIRAAIPK CWVK P +SMSY L D+W +WPL W AQ FWA+ Sbjct: 26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAI 96 The following BLAST results are available for this feature:
BLAST of DY260190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260190 ID=DY260190; Name=DY260190; organism=Citrus clementina; type=EST; length=1044bpback to top |