DY260190

Overview
NameDY260190
Unique NameDY260190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1044
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260190_ssr70 microsatellite DY260190_ssr70:70..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1448 contig Ccv1_Contig1448:1..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.373e-42
Identity = 89/177 (50.28%), Postives = 102/177 (57.63%), Query Frame = 3
Query:  153 MASWVLSECGLKPLPHIFPRPRTG-----INPSKARFLHSKKSLTDLKLPLVKC-SGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            MASWVLSECGL+PLP ++P+PRTG      NP+K RF     S TDL      C S    R++NW L+VSAPLRV  +E E+                        FDPGAPPPFKL+DIR AIPK CWVKDPW+SM Y        FGL      F+NWVVWPL W AQ   FWAL
Sbjct:    1 MASWVLSECGLRPLPRVYPKPRTGHPLLNSNPTKLRF-----SRTDLGNGSSFCLSSGILREKNWALRVSAPLRVLQVEEEEENKEGERVINGGEE----------FDPGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVAAYFNNWVVWPLYWFAQSTMFWAL 162          

HSP 2 Score: 29.6462 bits (65), Expect = 4.373e-42
Identity = 18/51 (35.29%), Postives = 26/51 (50.98%), Query Frame = 2
Query:  647 TLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRI--PQFRLPYHGGKIYPR 793
            T+F   FV  H+ G  +FSN+P++       G I      +PYHG +I  R
Sbjct:  157 TMFWALFVLGHDCGHGSFSNDPKLN---SVVGHILHSSILVPYHGWRISHR 204          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.051e-38
Identity = 84/174 (48.28%), Postives = 99/174 (56.90%), Query Frame = 3
Query:  153 MASWVLSECGLKPLPHIFPRPRTGI---NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            MA+W   +CGLKPL  + PRPRTG    + S+  FL + K +   K   ++C+    R+RNWGLKVSAPLRVA +E E                         FDPGAPPPF LADIRAAIPK CWVKDPW+SMSY        FGL       +NW+VWPL W AQ   FWAL
Sbjct:    1 MATWYHQKCGLKPLAPVIPRPRTGAALSSTSRVEFLDTNKVVAGPKFQPLRCN---LRERNWGLKVSAPLRVASIEEEQKSVDLTNGTNGVEHEKLPE-----FDPGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWAL 166          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.584e-33
Identity = 84/193 (43.52%), Postives = 95/193 (49.22%), Query Frame = 3
Query:  156 ASWVLSECGLKPLPHIFPRPRTGI-----NPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWALLCPVIIGVRKPFQMNPKL 719
            A WVLSECGL+PLP I+ RPR G      N  K R L   KS  +L       S   S+  NW L V+ P+ V+ + GED                        FD GAPPPF LADIRAAIPK CWVK+PW+SMSY        FGL      F+NWV WPL W  Q   FWAL           F  NPKL
Sbjct:    3 AGWVLSECGLRPLPRIYSRPRIGFTSKTTNLLKLRELPDSKSY-NLCSSFKVSSWSNSKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEF----FDAGAPPPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKL 190          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.143e-32
Identity = 80/181 (44.20%), Postives = 93/181 (51.38%), Query Frame = 3
Query:  153 MASWVLSECGLKPLPHIFPRPRTGI--NPSKARFLHSKKSLTDLKLPLVKCSGDFSRD---RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            MA+ VLSECG++PLP I+  PR+    N +K R   S  S      PL    G  SRD   RNW L VS PL       +PLE ++                        FDPGAPPPF LADIRAAIPK CWVK+PWKS+SY        F L       +NW+VWPL W AQ   FWAL
Sbjct:    1 MANLVLSECGIRPLPRIYTTPRSNFLSNNNKFRPSLSSSSYKTSSSPL--SFGLNSRDGFTRNWALNVSTPLTTPIFEESPLEEDNKQR---------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWAL 158          

HSP 2 Score: 31.187 bits (69), Expect = 1.143e-32
Identity = 18/52 (34.62%), Postives = 27/52 (51.92%), Query Frame = 2
Query:  644 GTLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRI--PQFRLPYHGGKIYPR 793
            GT+F   FV  H+ G  +FSN+P++       G +      +PYHG +I  R
Sbjct:  152 GTMFWALFVLGHDCGHGSFSNDPKLN---SVVGHLLHSSILVPYHGWRISHR 200          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.526e-32
Identity = 71/171 (41.52%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  153 MASWVLSECGLKPLPHIFPRPRTGINPSKARFLHSKKSLTDLKLPLVKCSGDFSRDRNWGLKVSAPLRVAPLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            MAS VLSECG +PLP  +P+  T    +          L      L    G +S+ RNW L V+ PL       E+                        FDPGAPPPF LADIRAAIPK CWVK+PW SMSY        FGL      F+NW++WPL W AQ   FWAL
Sbjct:    1 MASSVLSECGFRPLPRFYPKHTTSFASNPKPTFKFNPPLKPPSSLLNSRYGFYSKTRNWALNVATPLTTLQSPSEEDTER--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVAAYFNNWLLWPLYWFAQGTMFWAL 151          

HSP 2 Score: 31.187 bits (69), Expect = 2.526e-32
Identity = 18/52 (34.62%), Postives = 27/52 (51.92%), Query Frame = 2
Query:  644 GTLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRI--PQFRLPYHGGKIYPR 793
            GT+F   FV  H+ G  +FSN+P++       G +      +PYHG +I  R
Sbjct:  145 GTMFWALFVLGHDCGHGSFSNDPRLN---SVAGHLLHSSILVPYHGWRISHR 193          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.086e-25
Identity = 56/120 (46.67%), Postives = 61/120 (50.83%), Query Frame = 3
Query:  321 RNWGLKVSAPLRV-----APLEGEDXXXXXXXXXXXXXXXXXXXXXXXXFDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            RNW L V+ PL V      P+E E                         FDPGAPPPF LADIRAAIPK CWVK+PWKSMSY        F L       +NW+VWPL W AQ   FWAL
Sbjct:   17 RNWALNVTTPLTVDSSSSPPIEEEPKTQR--------------------FDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWAL 116          

HSP 2 Score: 31.187 bits (69), Expect = 7.086e-25
Identity = 18/52 (34.62%), Postives = 27/52 (51.92%), Query Frame = 2
Query:  644 GTLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRI--PQFRLPYHGGKIYPR 793
            GT+F   FV  H+ G  +FSN+P++       G +      +PYHG +I  R
Sbjct:  110 GTMFWALFVLGHDCGHGSFSNDPRLN---SVVGHLLHSSILVPYHGWRISHR 158          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.594e-18
Identity = 39/71 (54.93%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  453 FDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            FDPGAPPPFK+ADIRAAIPK CW K   +S+SY          L      F++W  WPL WPAQ   FWAL
Sbjct:   22 FDPGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFNSWFFWPLYWPAQGTMFWAL 92          

HSP 2 Score: 24.6386 bits (52), Expect = 6.594e-18
Identity = 16/50 (32.00%), Postives = 25/50 (50.00%), Query Frame = 2
Query:  644 GTLFLGPFVPRHNWGPETFSNEPQIKIWWGATGRIPQFRLPYHGGKIYPR 793
            GT+F   FV  H+ G  +FSN  ++  + G         +PY+G +I  R
Sbjct:   86 GTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILH-SLILVPYNGWRISHR 134          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.474e-16
Identity = 37/71 (52.11%), Postives = 46/71 (64.79%), Query Frame = 3
Query:  453 FDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            FDP APPPFK+A+IRA+IPK CWVK+PW+S+SY          L      FDNW++W +  P Q   FWAL
Sbjct:   25 FDPSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAIHFDNWLLWLIYCPIQGTMFWAL 95          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.288e-16
Identity = 38/71 (53.52%), Postives = 43/71 (60.56%), Query Frame = 3
Query:  453 FDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            FDP A PPFK+ DIRAAIPK CWVK P +SMSY          L      FD+W +WPL W AQ   FWA+
Sbjct:   23 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVTRDIFAVAALAMAAVYFDSWFLWPLYWVAQGTLFWAI 93          
BLAST of DY260190 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.128e-15
Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 3
Query:  453 FDPGAPPPFKLADIRAAIPKPCWVKDPWKSMSYXXXXXXXXFGLXXXXXXFDNWVVWPLNWPAQEPCFWAL 665
            FDP A PPFK+ DIRAAIPK CWVK P +SMSY          L       D+W +WPL W AQ   FWA+
Sbjct:   26 FDPSAQPPFKIGDIRAAIPKHCWVKSPLRSMSYVVRDIIAVAALAIAAVYVDSWFLWPLYWAAQGTLFWAI 96          
The following BLAST results are available for this feature:
BLAST of DY260190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FAD3C_SESIN4.373e-4250.28Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3C_SOYBN3.051e-3848.28Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3C_RICCO6.584e-3343.52Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_ARATH1.143e-3244.20Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH2.526e-3241.52Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA7.086e-2546.67Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3E_PHAAU6.594e-1854.93Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN1.474e-1652.11Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_BRANA4.288e-1653.52Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_ARATH2.128e-1552.11Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260190 ID=DY260190; Name=DY260190; organism=Citrus clementina; type=EST; length=1044bp
GGCAAAGAGAGATATTTGTGAGGTTGTTGTTCACACAACACTCTGACCTA
CTAAATTCTTATTTATTTACTTGGCTTGGCTTGGCTGCTTCACAATTCTT
TGACACCTATCTTCTGTCTCTCTTAACCCTTTGAGGATTTTTCTGAGACC
CAATGGCGAGTTGGGTTCTTTCAGAATGTGGCTTAAAGCCTCTGCCTCAT
ATTTTTCCGAGGCCAAGGACTGGAATCAATCCCTCAAAGGCCAGGTTTTT
GCACTCAAAAAAGAGTTTAACAGATCTAAAGCTCCCATTAGTTAAATGTT
CGGGTGATTTTTCTAGAGACAGGAACTGGGGTCTTAAAGTTAGTGCTCCA
CTGAGGGTGGCACCACTTGAGGGGGAGGATGAAGAAGAGAGAATCAACGG
TGTTAATGGGATTGGAAATAACAAAGGAGTCGAAGAAGAAGAGGGATCTG
AATTTGATCCTGGGGCTCCTCCTCCTTTCAAGCTAGCTGATATTAGAGCC
GCTATTCCAAAGCCTTGTTGGGTTAAGGATCCTTGGAAGTCCATGAGCTA
TGTTGTTAAAGATGTTGTGGTGGTTTTTGGCCTGGCCGCCGCCGCTGCCT
AATTTGACAATTGGGTTGTTTGGCCTTTGAACTGGCCTGCCCAGGAACCC
TGTTTTTGGGCCCTTTTGTGCCCCGTCATAATTGGGGTCCGGAAACCTTT
TCAAATGAACCCCAAATTAAAATATGGTGGGGGGCCACCGGCCGCATTCC
TCAATTCCGGCTTCCTTACCACGGAGGGAAAATTTACCCCCGGGACTCCC
CCCCCAAACCCGGGGCCTTGTTAAAAAAATAAAAAACCCGGCCCCCCCTT
TCTCCAAAAAATTTTCCGGACCTTTGGGAACAGGCCCACAAAATTTTTAA
AATAAAAAATTCCTTTTCCCCTCCCTTCCCCACCCCCTTCTTTCTCTTCA
AACAAAGAAACCCGGGGAAATTTTGGGTTTCTCCCTTTTACCCCACAACA
CCCACCCCTTTTTTCTCCCGGGGCGGAGGAACGCCCGGCCCCCC
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