DY260228

Overview
NameDY260228
Unique NameDY260228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1066
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.042e-36
Identity = 71/125 (56.80%), Postives = 94/125 (75.20%), Query Frame = 2
Query:    5 MASFVMLMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            MAS   L+KLV  C++ ++C M        A V+C  VVN+L+PCI+YV+ GGA+  +CC GVR+LY+ A++TADRQ++C CLKQAV+GI YT    GLAAGLPGKCG+NIPY+ISPSTDC  ++
Sbjct:    1 MASSGQLLKLV--CLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.054e-25
Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 2
Query:  101 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            +TC  V + L+PCI+Y+  GG V  NCCNGVR+L NAA++TADRQ  C CLK A + I      L LAAGLPGKCG+++PY+ISPSTDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIK--GLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.427e-24
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 2
Query:   47 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            +L+ VCL+  A    +A V+C TV+ DL PC+SYV+ GG V T CCNG+ TL + A+++ DRQ VC C+K A+ G++ +   +  A  LP KCG+++PY+ SPSTDC  +Q
Sbjct:    4 LLLAVCLV-LALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.782e-24
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2
Query:   26 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYV--SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            M L   C++VL  ++G+     +  VT   V N L+PCI+Y+  S  GAV   CC G+++L +AA++T  RQ  C C+K A +GI  T    GLA+GLPGKCG+NIPY+ISPSTDC+ V+
Sbjct:    5 MSLKLACVVVLCMVVGAPLA--QGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGI--TGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.782e-24
Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 2
Query:   26 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYV--SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            M L   C++VL  ++G+     +  VT   V N L+PCI+Y+  S  GAV   CC G+++L +AA++T  RQ  C C+K A +GI  T    GLA+GLPGKCG+NIPY+ISPSTDC+ V+
Sbjct:    1 MSLKLACVVVLCMVVGAPLA--QGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGI--TGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.552e-24
Identity = 59/120 (49.17%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   20 MLMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            M    VT   LV+   M    VS    +TC  V + L+PCI YV  GGAV   CCNG+RT+   AR+TADRQT C CLK     IS        AAGLPGKCG+N+PY+IS ST+C+ V+
Sbjct:    1 MASSAVTKLALVVALCMA---VSVAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSIS--GVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.197e-23
Identity = 55/114 (48.25%), Postives = 78/114 (68.42%), Query Frame = 2
Query:   47 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            ++V +C++ S  V     +TC  V ++L+PCI+YV  GGAV   CCNG+R + N A++TADRQT C CLKQ   +V G++        AA LPGKCG+N+PY+ISPST+C+ V+
Sbjct:   11 LVVALCMVVS--VPIAQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANN-----AAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.870e-23
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   26 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            M ++  C  V   ++G+ +      ++C  V + L+PCISY++ GGAV   CC+GV++L +AA++T DRQ  C CLK A + IS      G AA  PGKCG++IPY+ISPSTDCS+VQ
Sbjct:    4 MAMMVLCAGVTCMVVGAPYTEA---LSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSIS--GVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.895e-23
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = 2
Query:   47 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            ++V +C++ S  V     +TC  V ++L+PCI YV  GGAV   CCNG+R + N AR+T DRQ  C CLKQ   +V G++        AA LPGKCG+NIPYQISPST+C+ V+
Sbjct:   11 LVVALCMVVS--VPIAQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNN-----AAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of DY260228 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.349e-23
Identity = 49/112 (43.75%), Postives = 72/112 (64.29%), Query Frame = 2
Query:   47 ILVLVCLMGSAFV-STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 379
            +L L  L+ S F   ++A ++C  V  +L PC+ YV  GGA+  +CCNG+R L   A S +D+Q VC C+K  V  +SY+   L  AA LPGKCG+ +PY+I PST+C+ ++
Sbjct:    5 VLPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
The following BLAST results are available for this feature:
BLAST of DY260228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP3_PRUDU5.042e-3656.80Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
LTP1_MORNI1.054e-2558.06Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP6_ARATH4.427e-2446.85Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP2_GOSHI5.782e-2447.50Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI5.782e-2447.50Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_MALDO7.552e-2449.17Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_PRUAV2.197e-2348.25Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_HELAN2.870e-2346.61Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU4.895e-2349.12Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTPA_ARATH8.349e-2343.75Non-specific lipid-transfer protein 10 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260228 ID=DY260228; Name=DY260228; organism=Citrus clementina; type=EST; length=1066bp
CATAATGGCTAGCTTCGTAATGCTGATGAAACTTGTGACAGGCTGCATCT
TGGTGCTTGTTTGCTTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAA
GTAACATGCCGCACGGTGGTGAATGACTTGTCTCCATGCATATCCTACGT
GTCATACGGCGGGGCCGTGACGACGAACTGTTGCAACGGAGTGAGGACAC
TCTACAATGCCGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGTGC
TTGAAACAAGCTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGACT
CGCAGCTGGACTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGATCA
GCCCTTCTACTGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTAGC
CATCAGTTATGACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAA
TAAGAGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAAGAAGT
TGTTAGCGTCATCTGGTGCGATTTATGTTGTCCCAGGTTTCGTTAGGTTC
CGTCCCCCCCATAACTACTAAAGAATAAAATTTTGGTAAGCTCACCTCTA
TGGAGCGAACTTTCGCTATTACGCTGTCTATAAAAAAAAAAAAAAGAAAA
CCCCCCACTTCCTTCAACAATCCTTGACAACAAAAAAAACGCCCAGCTTA
TAATTTCTTCTCCCACCAAACCCGACCCCACCACCCTAAAAACTAACCAT
TATTTACCCTCACCCGCACATCTCGCTCCACAGCGCTCCACTAAACCCCT
CGCTTCTCCTCCCTCCCCCCCCTACCTCCTCCCCATACCCCTCACGTCTT
ACATCCAACTATCCCCGCCCGCTCCCACCAACCTACCCCCCCCCCCCCTA
TATCCAACATACCTTATTTTAAATAATAAACAATTACAATTATCGCGACA
CGCCAATCCCAACCAACAAGAACCTGTACAACCCTGCTGCGCCCCCTCCC
CACCTCCACCCCCCTCCCCCCCTACTCCCCGCCCACTCACACATCAACTC
TCAATTATATAACTTC
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