DY260260
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 3.006e-36 Identity = 82/157 (52.23%), Postives = 98/157 (62.42%), Query Frame = 2 Query: 413 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 FG TSLYVGDL+ NVTDSQL+D F QMG VV+VRVCRDL TRR LGYGYVNF+N Q+AARA++ LN+ P GKPIRVMYS RDPS +SG G IF+KN ++ +D +G F + + A KAI K N M L Sbjct: 33 FGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 1.035e-28 Identity = 68/153 (44.44%), Postives = 91/153 (59.48%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL ++VT++ LY+ F+ G V+S+RVCRD+ TRR LGY YVNF +A RAL+ +NF GKPIR+M+S RDPS KSG G +F+KN +K +D +G + F HF+ ++ A KAI K N M L Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.935e-28 Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRR LGY YVNF +A RAL+ +NF GKP+R+M+S RDPS KSG G IF+KN +K +D +G + F HF+ ++ A +AI K N M L Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 5.139e-28 Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRR LGY YVNF +A RAL+ +NF GKP+R+M+S RDPS KSG G IF+KN +K +D +G + F HF+ ++ A +AI K N M L Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 5.139e-28 Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRR LGY YVNF +A RAL+ +NF GKP+R+M+S RDPS KSG G IF+KN +K +D +G + F HF+ ++ A +AI K N M L Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 5.139e-28 Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRR LGY YVNF +A RAL+ +NF GKP+R+M+S RDPS KSG G IF+KN +K +D +G + F HF+ ++ A +AI K N M L Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 5.139e-28 Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRR LGY YVNF +A RAL+ +NF GKP+R+M+S RDPS KSG G IF+KN +K +D +G + F HF+ ++ A +AI K N M L Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 8.766e-28 Identity = 64/155 (41.29%), Postives = 90/155 (58.06%), Query Frame = 2 Query: 419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 ++SLYVGDL V++ L+++FNQ+G V ++RVCRD +TRR L Y YVN+ N +A RAL+ LN P GK R+M+S RDPS KSG G +F+KN +KG+D +G F H++ ++ A KAI K N M + Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMI 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 124.79 bits (312), Expect = 8.766e-28 Identity = 65/153 (42.48%), Postives = 90/153 (58.82%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL +VT++ LY+ F+ G ++S+RVCRD+ TRR LGY YVNF +A RAL+ +NF G+P+R+M+S RDPS KSG G IF+KN +K +D +G + F HF+ ++ A +AI K N M L Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.495e-27 Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 2 Query: 425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883 SLYVGDL + T++ LY+ F+ G ++S+RVCRD+ TRR LGY YVNF +A RAL+ +NF GKP+R+M+S RDPS KSG G IF+KN +K +D +G + F HF+ ++ A +AI K N M L Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163 The following BLAST results are available for this feature:
BLAST of DY260260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260260 ID=DY260260; Name=DY260260; organism=Citrus clementina; type=EST; length=1080bpback to top |