DY260260

Overview
NameDY260260
Unique NameDY260260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1080
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 3.006e-36
Identity = 82/157 (52.23%), Postives = 98/157 (62.42%), Query Frame = 2
Query:  413 FGTTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            FG TSLYVGDL+ NVTDSQL+D F QMG VV+VRVCRDL TRR LGYGYVNF+N Q+AARA++ LN+ P  GKPIRVMYS RDPS  +SG G IF+KN ++ +D          +G                   F  +   + A KAI K N M L
Sbjct:   33 FGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLL 189          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.035e-28
Identity = 68/153 (44.44%), Postives = 91/153 (59.48%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL ++VT++ LY+ F+  G V+S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF    GKPIR+M+S RDPS  KSG G +F+KN +K +D          +G +                 F HF+ ++ A KAI K N M L
Sbjct:   12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLL 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.935e-28
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF    GKP+R+M+S RDPS  KSG G IF+KN +K +D          +G +                 F HF+ ++ A +AI K N M L
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.139e-28
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF    GKP+R+M+S RDPS  KSG G IF+KN +K +D          +G +                 F HF+ ++ A +AI K N M L
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.139e-28
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF    GKP+R+M+S RDPS  KSG G IF+KN +K +D          +G +                 F HF+ ++ A +AI K N M L
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 5.139e-28
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF    GKP+R+M+S RDPS  KSG G IF+KN +K +D          +G +                 F HF+ ++ A +AI K N M L
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.139e-28
Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF    GKP+R+M+S RDPS  KSG G IF+KN +K +D          +G +                 F HF+ ++ A +AI K N M L
Sbjct:   12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.766e-28
Identity = 64/155 (41.29%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  419 TTSLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            ++SLYVGDL   V++  L+++FNQ+G V ++RVCRD +TRR L Y YVN+ N  +A RAL+ LN  P  GK  R+M+S RDPS  KSG G +F+KN +KG+D          +G                   F H++ ++ A KAI K N M +
Sbjct:    9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMI 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 8.766e-28
Identity = 65/153 (42.48%), Postives = 90/153 (58.82%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL  +VT++ LY+ F+  G ++S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF    G+P+R+M+S RDPS  KSG G IF+KN +K +D          +G +                 F HF+ ++ A +AI K N M L
Sbjct:   12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLL 163          
BLAST of DY260260 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.495e-27
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 2
Query:  425 SLYVGDLEANVTDSQLYDLFNQMGQVVSVRVCRDLSTRRPLGYGYVNFSNAQEAARALEMLNFPPSDGKPIRVMYSPRDPSPPKSGPGKIFLKNPEKGLDXXXXXXXXXXWGTSXXXXXXXXXXXXXXXXXFDHFDLRKPAPKAIGKFNRMFL 883
            SLYVGDL  + T++ LY+ F+  G ++S+RVCRD+ TRR LGY YVNF    +A RAL+ +NF    GKP+R+M+S RDPS  KSG G IF+KN +K +D          +G +                 F HF+ ++ A +AI K N M L
Sbjct:   12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG-NILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 163          
The following BLAST results are available for this feature:
BLAST of DY260260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
PABP2_ARATH3.006e-3652.23Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP4_HUMAN1.035e-2844.44Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABPB_XENLA3.935e-2843.14Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP1_RAT5.139e-2843.14Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE5.139e-2843.14Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN5.139e-2843.14Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN5.139e-2843.14Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PAP1A_DICDI8.766e-2841.29Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
PABPA_XENLA8.766e-2842.48Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP1_PONAB1.495e-2742.48Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260260 ID=DY260260; Name=DY260260; organism=Citrus clementina; type=EST; length=1080bp
TTTACCTTTCCCTTAAAGTGAAAAAAAAAAAAAACCGACCCCCCACTAGT
TTACCTATCCCCTCCGCCCCGCCCTCCTCCCCGGCGCCCACAATTCCATT
ATCCCTCCTTCCCCTTCCCTCTCCCCCCCTTTCCCCATCCATCTGAGAGG
CCAAAACCAAAAAAAAAAAAAAAAGCTTTGAGTTGTTTTTTAATTCCCTC
TTTTGTTTATTATTACTATCAATTTTAGGGTTTCTTTGGGTCCCGAAGAA
TAACAAGAGGAGAGGGAAGAAAAATCCCCATAAAAAGGAAAAAAAGAAAA
AAGGAAAAAATTTCGAGGGAAAAAAAAGGGATTTTTTCTTTCTGTATTTG
AGATGGCTCAGGTTCAAGCTCAGGGGCAGAACGTGAACGGAGGTGGGGCC
CATGCGAATCAATTCGGGACGACGTCGCTTTACGTCGGGGATCTGGAGGC
CAACGTGACGGATTCGCAGCTGTACGATCTGTTTAATCAAATGGGTCAAG
TGGTTTCGGTTCGGGTTTGTAGGGACTTGTCGACCCGACGACCTCTCGGT
TACGGCTACGTTAACTTCAGTAACGCACAGGAAGCTGCCAGGGCATTGGA
GATGCTGAACTTCCCCCCCTCCGATGGAAAGCCCATTAGGGTTATGTATT
CCCCTCGTGACCCAAGCCCTCCCAAAAGTGGCCCCGGGAAAATTTTCCTT
AAGAACCCAGAAAAGGGCCTTGACCCCCAACCTTTGCCCATACCTTTCCC
GCCTTGGGGAACCTCCCCCCCTGCCAGGTTGCCACCGACCCCCATGGGCC
CGCCAAGGGGCTAGGGATTTGACCATTTTGACCTGAGGAAGCCCGCCCCA
AAAGCCATTGGAAAATTTAACCGGATGTTTTTGGAAGGACCGCCAATTTT
AGGTGGGACCTTCCCCCCCCCCCCCCGGAAAAAAAACCCGGAAACCCCCC
AAAACCATTCCCCCCCTGGTTTCTTGAAAAAACCCCCCCCCAAACCCCCC
CCCAAAAAAAAACCCCCCAAAAAATTTTGTGGGGAAATAGCCCCCCCCCC
CCCACGCCCCTGTGGGAAGGGGGGGGAGGG
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